| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN013O04 | Sequence | 542 | 005191 (7) | ref|XP_007039159.1| | 1e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
| JMFN018A22 | Sequence | 615 | 005191 (7) | ref|XP_010271616.1| | 3e-85 | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera] | |||||
| JMFN033O16 | Sequence | 597 | 005191 (7) | ref|XP_010271616.1| | 2e-85 | PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera] | |||||
| JMSF031K07 | Sequence | 631 | 005191 (7) | ref|XP_007039159.1| | 2e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | 611 | 005191 (7) | ref|XP_007039159.1| | 1e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi |
| JMSF034H04 | Sequence | 615 | 005191 (7) | ref|XP_007039159.1| | 1e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | 572 | 005191 (7) | ref|XP_007039159.1| | 8e-86 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi |
This contig is upended
. : . : . : . : . : . :
rJMSF031K07- ACAAAAGAGCTT
JMFN033O16+ AAACAAAAGAGCTT
JMSF034H04+ TAAACAAAAGAGCTT
____________________________________________________________
consensus TAAACAAAAGAGCTT
. : . : . : . : . : . :
rJMSF031K07- TTAATAAAAGTTAAAACAGTACCGAAACAAATTCAATCTCAAGTATAACCACAAGAAAGA
JMFN033O16+ TTAATAAAAGTTAAAACAGTACCGAAACAAATTCAATCTCAAGTATAACCACAAGAAAGA
rJMSF034H04- GTATAACCACAAGAAAGA
JMSF034H04+ TTAATAAAAGTTAAAACAGTACCGAAACAAATTCAATCTCAAGTATAACCACAAGAAAGA
____________________________________________________________
consensus TTAATAAAAGTTAAAACAGTACCGAAACAAATTCAATCTCAAGTATAACCACAAGAAAGA
. : . : . : . : . : . :
rJMSF031K07- AACAAAACATCATACTAAAGTTTAGTCAAATTTTAAGGATTATAGAGATTCTTAGTTCCA
JMFN033O16+ AACAAAACATCATACTAAAGTTTAGTCAAATTTTAAGGATTATAGAGATTCTTAGTTCCA
rJMSF034H04- AACAAAACATCATACTAAAGTTTAGTCAAATTTTAAGGATTATAGAGATTCTTAGTTCCA
JMFN013O04- ACTAAAGTTTAGTCAAATTTTAAGGATTATAGAGATTCTTAGTTCCA
JMSF034H04+ AACAAAACATCATACTAAAGTTTAGTCAAATTTTAAGGATTATAGAGATTCTTAGTTCCA
____________________________________________________________
consensus AACAAAACATCATACTAAAGTTTAGTCAAATTTTAAGGATTATAGAGATTCTTAGTTCCA
. : . : . : . : . : . :
rJMSF031K07- TATATTGGAGAAACCATCTGATACAAGGTTGGCTCATCTTCAAAAACAAAATCTACTTGA
JMFN033O16+ TATATTGGAGAAACCATCTGATACAAGGTTGGCTCATCTTCAAAAACAAAATCTACTTGA
rJMSF034H04- TATATTGGAGAAACCATCTGATACAAGGTTGGCTCATCTTCAAAAACAAAATCTACTTGA
JMFN013O04- TATATTGGAGAAACCATCTGATACAAGGTTGGCTCATCTTCAAAAACAAAATCTACTTGA
JMSF031K07+ ATCTTCAAAAACAAAATCTACTTGA
JMFN018A22+ ATCTTCAAAAACAAAATCTACTTGA
JMSF034H04+ TATATTGGAGAAACCATCTGATACAAGGTTGGCTCATCTTCAAAAACAAAATCTACTTGA
____________________________________________________________
consensus TATATTGGAGAAACCATCTGATACAAGGTTGGCTCATCTTCAAAAACAAAATCTACTTGA
. : . : . : . : . : . :
rJMSF031K07- TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
JMFN033O16+ TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
rJMSF034H04- TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
JMFN013O04- TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
JMSF031K07+ TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
JMFN018A22+ TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
JMSF034H04+ TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
____________________________________________________________
consensus TCTTCTTCTTTGGCCTCAACTGATTGCTGTGCCCACACTTCTTTTTGCGACAGTTGACAG
. : . : . : . : . : . :
rJMSF031K07- CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
JMFN033O16+ CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
rJMSF034H04- CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
JMFN013O04- CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
JMSF031K07+ CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
JMFN018A22+ CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
JMSF034H04+ CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
____________________________________________________________
consensus CACGGGGATGCAAGCGAGCATAGCACTTGCGGCAGATCATCTTATCTTGGTTGTACTTCC
. : . : . : . : . : . :
rJMSF031K07- TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
JMFN033O16+ TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
rJMSF034H04- TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
JMFN013O04- TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
JMSF031K07+ TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
JMFN018A22+ TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
JMSF034H04+ TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
____________________________________________________________
consensus TGGCCAAAGCCATCAAAGATGGTTCAATAATTCCTCCACGAAGCCTCAGCACCAGGTGAA
. : . : . : . : . : . :
rJMSF031K07- GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
JMFN033O16+ GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
rJMSF034H04- GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
JMFN013O04- GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
JMSF031K07+ GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
JMFN018A22+ GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
JMSF034H04+ GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
____________________________________________________________
consensus GAGTCGACTCTTTCTGAATGTTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTCC
. : . : . : . : . : . :
rJMSF031K07- CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
JMFN033O16+ CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
rJMSF034H04- CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
JMFN013O04- CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
JMSF031K07+ CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
JMFN018A22+ CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
JMSF034H04+ CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
____________________________________________________________
consensus CGGCAAAAATCAGCCTCTGCTGATCCGGCGGAATTCCTTCCTTATCTTGAATCTTAGCTT
. : . : . : . : . : . :
rJMSF031K07- TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
JMFN033O16+ TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
rJMSF034H04- TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
JMFN013O04- TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
JMSF031K07+ TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
JMFN018A22+ TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
JMSF034H04+ TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
____________________________________________________________
consensus TGACATTGTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGAG
. : . : . : . : . : . :
rJMSF031K07- TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCCGATCTCCGTTGCCTCCCC
JMFN033O16+ TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCCGA
rJMSF034H04- TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCCGATCTCCGTTGCCTCCCC
JMFN013O04- TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCC
JMSF031K07+ TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCCGATCTCCGTTGCCTCCCC
JMFN018A22+ TTTTAACGAAGATCTGCATTTTCTCTCTCGCC
JMSF034H04+ TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCCGATCTCCGTTGCCTCCCCC
____________________________________________________________
consensus TTTTAACGAAGATCTGCATTTTCTCTCTCGCCTCACTTCCCGATCTCCGTTGCCTCCCCC