Contig 005183:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF032N04Sequence719005183 (2)ref|XP_008452556.1|3e-54PREDICTED: protein DCL, chloroplastic [Cucumis melo]699005183 (2)gb|AFK33859.1|4e-71unknown [Lotus japonicus]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF032N04- TCATCCTCCACTGAAGATTTACAGAA
                      ____________________________________________________________
consensus TCATCCTCCACTGAAGATTTACAGAA
 
. : . : . : . : . : . :
rJMSF032N04- TTATACTCTGGTACTTTTCACAACATACTAAATGCAACAATTTACATCATCTTAGATCAT
                      ____________________________________________________________
consensus TTATACTCTGGTACTTTTCACAACATACTAAATGCAACAATTTACATCATCTTAGATCAT
 
. : . : . : . : . : . :
rJMSF032N04- TGCCCTTAAAGTGGTGGTTGCTCAAAGCAATAGGTCCAAGAATTTGTTTTCATAGAAGTT
                      ____________________________________________________________
consensus TGCCCTTAAAGTGGTGGTTGCTCAAAGCAATAGGTCCAAGAATTTGTTTTCATAGAAGTT
 
. : . : . : . : . : . :
rJMSF032N04- GGGATAACTACAAGTTCAAAACTATACCTTCACTCACGCGTACGCCTCTGAAAATGCCTA
                      ____________________________________________________________
consensus GGGATAACTACAAGTTCAAAACTATACCTTCACTCACGCGTACGCCTCTGAAAATGCCTA
 
. : . : . : . : . : . :
rJMSF032N04- AGAATAAAGCTGTCAGCATAAAGTGGGTAGTTTTTCCTGATCAAGCCCTTTACGCACTTC
                      ____________________________________________________________
consensus AGAATAAAGCTGTCAGCATAAAGTGGGTAGTTTTTCCTGATCAAGCCCTTTACGCACTTC
 
. : . : . : . : . : . :
rJMSF032N04- CAGTAAGAAAAGTCAACAGATTCTCCATCGTTACGCACTATGAATAAACATCTTGATCTT
JMSF032N04+ AGTANGAAAAGTCAACAGATTCTCCATCGTTACGCACTATGAATAAACATCTTGATCTT
                      ____________________________________________________________
consensus CAGTAAGAAAAGTCAACAGATTCTCCATCGTTACGCACTATGAATAAACATCTTGATCTT
 
. : . : . : . : . : . :
rJMSF032N04- CCAAAATTAGGGTGGTATCCTATAGTAATATAGTTAACACCACATCCAATCTTCTTTTCA
JMSF032N04+ CCAAAATTAGGGTGGTATCCTATAGTAATATAGTTAACACCACATCCAATCTTCTTTTCA
                      ____________________________________________________________
consensus CCAAAATTAGGGTGGTATCCTATAGTAATATAGTTAACACCACATCCAATCTTCTTTTCA
 
. : . : . : . : . : . :
rJMSF032N04- CCCTCTGGATGGTATGGAAGAAACCTTTCTAAAATAACTTTTTCATGCTCAAAGCTTAGT
JMSF032N04+ CCCTCTGGATGGTATGGAAGAAACCTTTCTAAAATAACTTTTTCATGCTCAAAGCTTAGT
                      ____________________________________________________________
consensus CCCTCTGGATGGTATGGAAGAAACCTTTCTAAAATAACTTTTTCATGCTCAAAGCTTAGT
 
. : . : . : . : . : . :
rJMSF032N04- CTATCACCAGGTTCGTATCTTCCAGAATGAAGAATCATCCTAGCAAACCCCACAAGCGGA
JMSF032N04+ CTATCACCAGGTTCGTATCTTCCAGAATGAAGAATCATCCTAGCAAACCCCACAAGCGGA
                      ____________________________________________________________
consensus CTATCACCAGGTTCGTATCTTCCAGAATGAAGAATCATCCTAGCAAACCCCACAAGCGGA
 
. : . : . : . : . : . :
rJMSF032N04- ATGGTGTCCTCCAAAATCTTTTGCTCCCAATCAACCCAACTCTCTTCGTCACTCTTCTCA
JMSF032N04+ ATGGTGTCCTCCAAAATCTTTTGCTCCCAATCAACCCAACTCTCTTCGTCACTCTTCTCA
                      ____________________________________________________________
consensus ATGGTGTCCTCCAAAATCTTTTGCTCCCAATCAACCCAACTCTCTTCGTCACTCTTCTCA
 
. : . : . : . : . : . :
rJMSF032N04- TTCTCATCGTAATCCTCCTCCTCCTCCACTGGCTCTTCCTCTCCGGCAGGATCCAACGAC
JMSF032N04+ TTCTCATCGTAATCCTCCTCCTCCTCCACTGGCTCTTCCTCTCCGGCAGGATCCAACGAC
                      ____________________________________________________________
consensus TTCTCATCGTAATCCTCCTCCTCCTCCACTGGCTCTTCCTCTCCGGCAGGATCCAACGAC
 
. : . : . : . : . : . :
rJMSF032N04- GGCGTGGCCACCGGTTTCCTCAGCAGCTCCGAGCCGTAAGCGTCCTGGTCAGTCCCA
JMSF032N04+ GGCGTGGCCACCGGTTTCCTCAGCAGCTCCGAGCCGTAAGCGTCCTGGTCAGTCCCAATC
                      ____________________________________________________________
consensus GGCGTGGCCACCGGTTTCCTCAGCAGCTCCGAGCCGTAAGCGTCCTGGTCAGTCCCAATC
 
. : . : . : . : . : . :
JMSF032N04+ CTGCCACCCTCAGAGCCGATCTTCAGCGCCGTCACGCACCGGCGAAACTCAGGTTGCCTC
                      ____________________________________________________________
consensus CTGCCACCCTCAGAGCCGATCTTCAGCGCCGTCACGCACCGGCGAAACTCAGGTTGCCTC
 
. : . : . : . : . : . :
JMSF032N04+ CACCCGTGAAATGAACGAGACGACGGCGGCGGCGAGAGTGAATGGCGAGACGACCGGATT
                      ____________________________________________________________
consensus CACCCGTGAAATGAACGAGACGACGGCGGCGGCGAGAGTGAATGGCGAGACGACCGGATT
 
. : . : . : . : . : . :
JMSF032N04+ CTGTTTAGGAGTTGAAGTTGCAAAGGTCTGGACGAAGAAATTGAAATCATTTCTATATAG
                      ____________________________________________________________
consensus CTGTTTAGGAGTTGAAGTTGCAAAGGTCTGGACGAAGAAATTGAAATCATTTCTATATAG
 
. : . : . : . : . : . :
JMSF032N04+ ATTAGCAAATCCAATAAACTTTCGCTAATTTCGTTATTACTATCGCGCGCAATTCAACAT
                      ____________________________________________________________
consensus ATTAGCAAATCCAATAAACTTTCGCTAATTTCGTTATTACTATCGCGCGCAATTCAACAT
 
. : . : . : . : . : . :
JMSF032N04+ GATAATAGTTTCTCTCTATCGCTTTTGAACTTTGATTCTATGAAGAAGCTGCGAGTACTT
                      ____________________________________________________________
consensus GATAATAGTTTCTCTCTATCGCTTTTGAACTTTGATTCTATGAAGAAGCTGCGAGTACTT