| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019M14 | Sequence | 448 | 005181 (5) | gb|AGB85112.1| | 4e-67 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] | 728 | 001412 (4) | gb|AGB85112.1| | 3e-139 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] |
| JMSF016P11 | Sequence | 499 | 005181 (5) | dbj|BAF47749.1| | 5e-101 | ADP-glucose pyrophosphorylase beta subunit IbAGPb3 [Ipomoea batatas] | 775 | 018178 | ref|XP_009607169.1| | 9e-62 | PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Nicotiana tomen |
| JMSF031P07 | Sequence | 647 | 005181 (5) | gb|AFL55399.1| | 7e-131 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] | 729 | 001412 (4) | gb|AGB85112.1| | 3e-135 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] |
| JMSF032K01 | Sequence | 640 | 005181 (5) | gb|AFL55399.1| | 9e-91 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] | 710 | 001412 (4) | gb|AGB85112.1| | 3e-116 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] |
| JMSF050F03 | Sequence | 632 | 005181 (5) | gb|AFL55399.1| | 6e-122 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] | 751 | 001412 (4) | gb|AGB85112.1| | 3e-139 | ADP-glucose pyrophosphorylase large subunit 4 [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
JMSF031P07+ CTGACAGCATCTGCAGTACCTNGGAACCA
____________________________________________________________
consensus CTGACAGCATCTGCAGTACCTNGGAACCA
. : . : . : . : . : . :
JMSF031P07+ TCTCTTACCTGCTTCCCCGGGTGTTTGCGTTGCTGCTAAGACCTCCACGTAGCCATCCCC
JMSF050F03+ GCTTCCCCGGGTGTTTGCGTTGCTGCTAAGACCTCCACGTAGCCATCCCC
JMSF032K01+ GCTTCCCCGGGTGTTTGCGTTGCTGCTAAGACCTCCACGTAGCCATCCCC
____________________________________________________________
consensus TCTCTTACCTGCTTCCCCGGGTGTTTGCGTTGCTGCTAAGACCTCCACGTAGCCATCCCC
. : . : . : . : . : . :
JMSF016P11+ GCCCGTGCAAGGTGCCTGTTAAGCGAGGCTGA
JMSF031P07+ AAACGTGACGCCACTGCCAAAGTTGTAAGCCCGTGCAAGGTGCCTGTTAAGCGAGGCTGA
JMSF050F03+ AAACGTGACGCCACTGCCAAAGTTGTAAGCCCGTGCAAGGTGCCTGTTAAGCGAGGCTGA
JMSF032K01+ AAACGTGACGCCACTGCCAAAGTTGTAAGCCCGTGCAAGGTGCCTGTTAAGCGAGGCTGA
____________________________________________________________
consensus AAACGTGACGCCACTGCCAAAGTTGTAAGCCCGTGCAAGGTGCCTGTTAAGCGAGGCTGA
. : . : . : . : . : . :
JMSF016P11+ GTTGAACTGAGTGAGAATGTAGACTTTGTTTATCCCGCTATTGATGCAATTGCTCATTGG
JMSF031P07+ GTTGAACTGAGTGAGAATGTAGACTTTGTTTATCCCGCTATTGATGCAATTGCTCATTGG
JMSF050F03+ GTTGAACTGAGTGAGAATGTAGACTTTGTTTATCCCGCTATTGATGCAATTGCTCATTGG
JMSF032K01+ GTTGAACTGAGTGAGAATGTAGACTTTGTTTATCCCGCTATTGATGCAATTGCTCATTGG
____________________________________________________________
consensus GTTGAACTGAGTGAGAATGTAGACTTTGTTTATCCCGCTATTGATGCAATTGCTCATTGG
. : . : . : . : . : . :
JMSF016P11+ AACATCAATCAGCCTATAGGCTCCTCCTATCGGAACAGCAGGCTTGGCACGACGCTTGGT
JMSF031P07+ AACATCAATCAGCCTATAGGCTCCTCCTATCGGAACAGCAGGCTTGGCACGACGCTTGGT
JMSF050F03+ AACATCAATCAGCCTATAGGCTCCTCCTATCGGAACAGCAGGCTTGGCACGACGCTTGGT
JMFF019M14+ GGAACAGCAGGCTTGGCACGACGCTTGGT
JMSF032K01+ AACATCAATCAGCCTATAGG----------CTCCTCAGCAGGCTTGGCACGACGCTTGGT
____________________________________________________________
consensus AACATCAATCAGCCTATAGGCTCCTCCTATCGGAACAGCAGGCTTGGCACGACGCTTGGT
. : . : . : . : . : . :
JMSF016P11+ TAGAGGGAAAAGGCGGGTGCCAGCGCCCCCTCCTAGTATAATCGCCACAACTGTTCTTGG
JMSF031P07+ TAGAGGGAAAAGGCGGGTGCCAGCGCCCCCTCCTAGTATAATCGCCACAACTGTTCTTGG
JMSF050F03+ TAGAGGGAAAAGGCGGGTGCCAGCGCCCCCTCCTAGTATAATCGCCACAACTGTTCTTGG
JMFF019M14+ TAGAGGGAAAAGGCGGGTGCCAGCGCCCCCTCCTAGTATAATCGCCACAACTGTTCTTGG
JMSF032K01+ TAGAGGGAAAAGGCGGGTGCCAGCGCCCCCTCCTAGTATAATCGCCACAACTGTTCTTGG
____________________________________________________________
consensus TAGAGGGAAAAGGCGGGTGCCAGCGCCCCCTCCTAGTATAATCGCCACAACTGTTCTTGG
. : . : . : . : . : . :
JMSF016P11+ ATCCGTCTTCTCCGTCTCAAAGCCTTTCAACTTAGCCTCACCTGCAACATCAGTAGTGAG
JMSF031P07+ ATCCGTCTTCTCCGTCTCAAAGCCTTTCAACTTAGCCTCACCTGCAACATCAGTAGTGAG
JMSF050F03+ ATCCGTCTTCTCCGTCTCAAAGCCTTTCAACTTAGCCTCACCTGCAACATCAGTAGTGAG
JMFF019M14+ ATCCGTCTTCTCCGTCTCAAAGCCTTTCAACTTAGCCTCACCTGCAACATCAGTAGTGAG
JMSF032K01+ ATCCGTCTTCTCCGTCTCAAAGCCTTTCAACTTAGCCTCACCTGCAACATCAGTAGTGAG
____________________________________________________________
consensus ATCCGTCTTCTCCGTCTCAAAGCCTTTCAACTTAGCCTCACCTGCAACATCAGTAGTGAG
. : . : . : . : . : . :
JMSF016P11+ GGACATGTTCACCCTCGGCCTGGCAACAACATTGTACTTGCTACCGTTTCTTTGCTGAAA
JMSF031P07+ GGACATGTTCACCCTCGGCCTGGCAACAACATTGTACTTGCTACCGTTTCTTTGCTGAAA
JMSF050F03+ GGACATGTTCACCCTCGGCCTGGCAACAACATTGTACTTGCTACCGTTTCTTTGCTGAAA
JMFF019M14+ GGACATGTTCACCCTCGGCCTGGCAACAACATTGTACTTGCTACCGTTTCTTTGCTGAAA
JMSF032K01+ GGACATGTTCACCCTCGGCCTGGCAACAACATTGTACTTGCTACCGTTTCTTTGCTGAAA
____________________________________________________________
consensus GGACATGTTCACCCTCGGCCTGGCAACAACATTGTACTTGCTACCGTTTCTTTGCTGAAA
. : . : . : . : . : . :
JMSF016P11+ CTTCCTAAGCTTTATCTTCTTCCCCATGAACTCTCCATTGCAGAACTTCACACTCAACCT
JMSF031P07+ CTTCCTAAGCTTTATCTTCTTCCCCATGAACTCTCCATTGCAGAACTTCACACTCAACCT
JMSF050F03+ CTTCCTAAGCTTTATCTTCTTCCCCATGAACTCTCCATTGCAGAACTTCACACTCAACCT
JMFF019M14+ CTTCCTAAGCTTTATCTTCTTCCCCATGAACTCTCCATTGCAGAACTTCACACTCAACCT
JMSF032K01+ CTTCCTAAGCTTTATCTTCTTCCCCATGAACTCTCCATTGCAGAACTTCACACTCAACCT
____________________________________________________________
consensus CTTCCTAAGCTTTATCTTCTTCCCCATGAACTCTCCATTGCAGAACTTCACACTCAACCT
. : . : . : . : . : . :
JMSF016P11+ GCAACTGCTTACTGTCATTGCAGCCCCTTCACGCAGCTGCCTGGCAGCCAACAGGGCGAT
JMSF031P07+ GCAACTGCTTACTGTCATTGCAGCCCCTTCACGCAGCTGCCTGGCAGCCAACAGGGCGAT
JMSF050F03+ GCAACTGCTTACTGTCATTGCAGCCCCTTCACGCAGCTGCCTGGCAGCCAACAGGGCGAT
JMFF019M14+ GCAACTGCTTACTGTCATTGCAGCCCCTTCACGCAGCTGCCTGGCAGCCAACAGGGCGAT
JMSF032K01+ GCAACTGCTTACTGTCATTGCAGCCCCTTCACGCAGCTGCCTGGCAGCCAACAGGGCGAT
____________________________________________________________
consensus GCAACTGCTTACTGTCATTGCAGCCCCTTCACGCAGCTGCCTGGCAGCCAACAGGGCGAT
. : . : . : . : . : . :
JMSF016P11+ TCGCCCATCGGCTGTCACTGCCATTTTTGCTGGAGATCAAGAAAGC
JMSF031P07+ TCGCCCATCGGCTGTCACTGCCATTTTTGCTGGAGATCAAGAAAGCAAAGTTTTTTAAGT
JMSF050F03+ TCGCCCATCGGCTGTCACTGCCATTTTTGCTGGAGATCAAGAAAGCAAAGTTTTTTAAGT
JMFF019M14+ TCGCCCATCGGCTGTCACTGCCATTTTTGCTGGAGATCAAGAAAGCAAAGTTTTTTAAGT
JMSF032K01+ TCGCCCATCGGCTGTCACTGCCATTTTTGCTGGAGATCAAGAAAGCAAAGTTTTTTAAGT
____________________________________________________________
consensus TCGCCCATCGGCTGTCACTGCCATTTTTGCTGGAGATCAAGAAAGCAAAGTTTTTTAAGT
. : . : . : . : . : . :
JMSF031P07+ GGAAATCACTTGACTAT
JMSF050F03+ GGAAATCACTTGACTATACATATGGTTTGAGCCTTGAGGC
JMFF019M14+ GGAAATCACTTGACTATACATATGGTTTGAGCCTTGAGGCTGTTTTTCTGTGATACAAT
JMSF032K01+ GGAAATCACTTGACTATACATATGGTTTGAGCCTTGAGGCTGTTTTTCTGTGATACAATC
____________________________________________________________
consensus GGAAATCACTTGACTATACATATGGTTTGAGCCTTGAGGCTGTTTTTCTGTGATACAATC