| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003I11 | Sequence | 281 | 005179 (8) | ||||||||
| JMSF025C12 | Sequence | 577 | 005179 (8) | ref|XP_006343159.1| | 84.0 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] | 519 | 005179 (8) | ref|XP_006343159.1| | 84.0 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] |
| JMSF032I13 | Sequence | 593 | 005179 (8) | ref|XP_006343159.1| | 84.0 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] | 537 | 005179 (8) | ref|XP_006343159.1| | 84.0 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] |
| JMSF043L01 | Sequence | 794 | 009325 (3) | ref|XP_008226846.1| | 1e-126 | PREDICTED: cell differentiation protein RCD1 homolog [Prunus mume] | 561 | 005179 (8) | ref|XP_006343159.1| | 84.7 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] |
| JMSF050J21 | Sequence | 577 | 005179 (8) | ref|XP_006343159.1| | 84.0 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] | 518 | 005179 (8) | ref|XP_006343159.1| | 84.0 | PREDICTED: uncharacterized protein LOC102595503 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF043L01+ CCATCACAAAAGTCTGTCAATTCATTTGCA
____________________________________________________________
consensus CCATCACAAAAGTCTGTCAATTCATTTGCA
. : . : . : . : . : . :
rJMSF043L01+ AATGAAGTGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
JMSF050J21- TAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
rJMSF032I13+ GGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
rJMSF025C12+ GGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
rJMSF050J21+ TAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
JMSF003I11- GGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
JMSF025C12- GGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
JMSF032I13- GGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
____________________________________________________________
consensus AATGAAGGGCATAGCATCTCACAACACCATGGCACATTCATTAGCCCCAAGATTACCAGC
. : . : . : . : . : . :
rJMSF043L01+ TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
JMSF050J21- TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
rJMSF032I13+ TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
rJMSF025C12+ TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
rJMSF050J21+ TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
JMSF003I11- TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
JMSF025C12- TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
JMSF032I13- TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
____________________________________________________________
consensus TGCTTCAATCTCAACATCACCAAAGAAGAATGCCCATCTCCCTTCTTGTTTGTATTTCCA
. : . : . : . : . : . :
rJMSF043L01+ CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
JMSF050J21- CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
rJMSF032I13+ CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
rJMSF025C12+ CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
rJMSF050J21+ CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
JMSF003I11- CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
JMSF025C12- CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
JMSF032I13- CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
____________________________________________________________
consensus CAAGGTGTTGTCTTGCCAACAAACCTCTTCTGAAAAAGGTCTAGGGCAAAAGCTCGTCAC
. : . : . : . : . : . :
rJMSF043L01+ TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
JMSF050J21- TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
rJMSF032I13+ TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
rJMSF025C12+ TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
rJMSF050J21+ TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
JMSF003I11- TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
JMSF025C12- TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
JMSF032I13- TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
____________________________________________________________
consensus TCGCAGGAGTCTTGCATTGAGCTTGGGAGGCGCGGTGTTGGGATTGAAGGTGGGGGAGAG
. : . : . : . : . : . :
rJMSF043L01+ GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
JMSF050J21- GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
rJMSF032I13+ GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
rJMSF025C12+ GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
rJMSF050J21+ GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
JMSF003I11- GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGA
JMSF025C12- GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
JMSF032I13- GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
____________________________________________________________
consensus GGGCGCTAATGCAGCGGCGAGGAGGCCTCCGCCGCCACCAGTAGAGGAGAAGAAGGATCC
. : . : . : . : . : . :
rJMSF043L01+ CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
JMSF050J21- CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
rJMSF032I13+ CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
rJMSF025C12+ CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
rJMSF050J21+ CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
JMSF025C12- CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
JMSF032I13- CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
____________________________________________________________
consensus CAATGTGAGTGGCGTGATGGCGAAAGTGTTGGCTAGCAAGAGAAGGAAAGAGGCCATGAA
. : . : . : . : . : . :
rJMSF043L01+ AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
JMSF050J21- AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
rJMSF032I13+ AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
rJMSF025C12+ AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
rJMSF050J21+ AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
JMSF025C12- AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
JMSF032I13- AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
____________________________________________________________
consensus AGAATCCATGGCAAAGCTAAGAGAGAGAGGGAAGCCTGTTGTTCAGATTCAGGAGCCTTC
. : . : . : . : . : . :
rJMSF043L01+ GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
JMSF050J21- GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
rJMSF032I13+ GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
rJMSF025C12+ GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
rJMSF050J21+ GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
JMSF025C12- GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
JMSF032I13- GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
____________________________________________________________
consensus GTCTGAATAGATGTCTCTGTGCTCAATTCATATATGTTCTCCTAATAACATCTTTAATTC
. : . : . : . : . : . :
rJMSF043L01+ CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTTAGACC
JMSF050J21- CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTTAGACCTTGCAAAGA
rJMSF032I13+ CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTTAGACCTTGCAAAGA
rJMSF025C12+ CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTT
rJMSF050J21+ CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATT
JMSF025C12- CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTTAGACCTTGCAAAGA
JMSF032I13- CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTTAGACCTTGCAAAGA
____________________________________________________________
consensus CTCCAAATTCTTGTATCAATTAAAATTCTCTAGAGAAGGGGGATTTAGACCTTGCAAAGA
. : . : . : . : . : . :
JMSF050J21- GCCTTAAAGTGTGACAATTACGATTTTATTGCATA
rJMSF032I13+ GCCT
JMSF025C12- GCCTTAAAGTGTGACAATTACGATTTTATTGCATA
JMSF032I13- GCCTTAAAGTGTGACAATTACGATTTTATTGCATATGTTTTCTGGAGTCTAAAAAAAAAA
____________________________________________________________
consensus GCCTTAAAGTGTGACAATTACGATTTTATTGCATATGTTTTCTGGAGTCTAAAAAAAAAA