Contig 005176:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N17Sequence584005176 (3)ref|XP_002270073.1|9e-92PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]791001196 (7)ref|XP_009788100.1|3e-27PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Nicotiana sylvestris]
JMFF044A06Sequence626005176 (3)ref|XP_002270073.1|7e-103PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]635001196 (7)
JMSF032F17Sequence670005176 (3)ref|XP_002270073.1|7e-111PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera]751001196 (7)ref|XP_011033144.1|2e-138PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Populus euphratica]

Alignment

This contig is upended


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JMSF032F17+                                                            TAAGCTGCCTT
                      ____________________________________________________________
consensus                                                              TAAGCTGCCTT
 
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JMFF044A06+                                 GCCGCTGAAACACAGCCCCAGTCAGAGTCTCGAGCGCC
JMFF018N17+                                                       CAGAGTCTCGAGCGCC
JMSF032F17+           TTCACAGCAGAAATCAATGGTGGCCGCTGAAACACAGCCCCAGTCAGAGTCTCGAGCGCC
                      ____________________________________________________________
consensus             TTCACAGCAGAAATCAATGGTGGCCGCTGAAACACAGCCCCAGTCAGAGTCTCGAGCGCC
 
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JMFF044A06+           CGAGCCACC-TTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
JMFF018N17+           CGAGCCACCTTTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
JMSF032F17+           CGAGCCACC-TTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
                      ____________________________________________________________
consensus             CGAGCCACC-TTCGCGACATCAGGCACTGCAGAGTGCAATCGTGCAATACAGACATACTC
 
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JMFF044A06+           TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
JMFF018N17+           TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
JMSF032F17+           TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
                      ____________________________________________________________
consensus             TTTTCCAGCACCCTGCTGGGATTTCACGAGCCGGGTGGCCCGATCAATACAGACAATCAA
 
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JMFF044A06+           GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
JMFF018N17+           GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
JMSF032F17+           GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
                      ____________________________________________________________
consensus             GTTCCCCGTGACTTTCGGGTCAAGCGTGCCGCTATGACCCGTTTTCTCGACCCGCAAGAG
 
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JMFF044A06+           TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
JMFF018N17+           TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
JMSF032F17+           TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
                      ____________________________________________________________
consensus             TCTCTTAATCCAAGCCACGACTTCATGGGACGAGGGATTCGCAGGCTTATCGAGGTTGAG
 
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JMFF044A06+           AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
JMFF018N17+           AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
JMSF032F17+           AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
                      ____________________________________________________________
consensus             AACACCGTACCTGATGTACTCGGCAAGCGGCCGCTTGAGCGGAGTGTGGCCGGAGGGAAG
 
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JMFF044A06+           AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
JMFF018N17+           AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
JMSF032F17+           AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
                      ____________________________________________________________
consensus             AGGAGTGTAGTGTCCGGTCCGAACATTCAACCGGTCGTAGTTCTTCAGGAGAATCGGCCA
 
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JMFF044A06+           CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
JMFF018N17+           CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
JMSF032F17+           CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
                      ____________________________________________________________
consensus             CTGGGACGTATCAATGGAAGGAGTGAAGCTCTGTGGCTTGATGAGATAATCACCATGAAC
 
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JMFF044A06+           CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
JMFF018N17+           CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
JMSF032F17+           CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
                      ____________________________________________________________
consensus             CTCGGTTGGTTCATTGCCGCCGGGCAAAGCTTCCGGGTCATCATTAGACTTGCTTTTCTT
 
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JMFF044A06+           CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
JMFF018N17+           CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
JMSF032F17+           CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
                      ____________________________________________________________
consensus             CTTCTTCTTCTTCTCTGAGCGAGAGAGCTCCACATCAGTCATGGCTGCCGCCGGCTTAGT
 
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JMFF044A06+           GTATAGGTGAGACCAAATGAGACACAATCACAGCCTAAGGGGAGATGTT           
JMFF018N17+           GTATAGGTGAGACCAA                                            
JMSF032F17+           GTATAGGTGAGACCAAATGAGACACAATCACAGCCTAAGGGGAGATGTTAAAAATGGACC
                      ____________________________________________________________
consensus             GTATAGGTGAGACCAAATGAGACACAATCACAGCCTAAGGGGAGATGTTAAAAATGGACC