| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF024A21 | Sequence | 654 | 005175 (7) | gb|KJB18802.1| | 4e-128 | hypothetical protein B456_003G069700 [Gossypium raimondii] | 785 | 005175 (7) | ref|XP_011099799.1| | 1e-136 | PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic [Sesamum ind |
| JMSF024M10 | Sequence | 676 | 005175 (7) | ref|XP_006345169.1| | 5e-113 | PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Solanu | 747 | 005175 (7) | ref|XP_011099799.1| | 9e-103 | PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic [Sesamum ind |
| JMSF032F07 | Sequence | 656 | 005175 (7) | ref|XP_006345169.1| | 1e-110 | PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Solanu | 780 | 005175 (7) | gb|EYU43489.1| | 4e-89 | hypothetical protein MIMGU_mgv1a006980mg [Erythranthe guttata] |
| JMSF035I05 | Sequence | 430 | 005175 (7) | gb|KJB18802.1| | 1e-57 | hypothetical protein B456_003G069700 [Gossypium raimondii] | 655 | 012518 (2) | |||
This contig is upended
. : . : . : . : . : . :
rJMSF024M10- GTATCCACTTGTTTAAAGCTTGCCAAATT
____________________________________________________________
consensus GTATCCACTTGTTTAAAGCTTGCCAAATT
. : . : . : . : . : . :
rJMSF024M10- TATATTATAAAAGTGAGAGTATGTGAATAGCCTAATGCAAGAAGTATTCAGAGTTTCAAC
rJMSF032F07- TATGTGAATAGCCTAATGCAAGAAGTATTCAGAGTTTCAAC
____________________________________________________________
consensus TATATTATAAAAGTGAGAGTATGTGAATAGCCTAATGCAAGAAGTATTCAGAGTTTCAAC
. : . : . : . : . : . :
rJMSF024M10- CTAATAATTTGATAGAACACAACATAATATAGGAAATTGGATAGCAAAATGTTACACAAA
rJMSF032F07- CTAATAATTTGATAGAACACAACATAATATAGGAAATTGGATAGCAAAATGTTACAC-AA
rJMSF024A21- CACAACATAATATAGGAAATTGGATAGCAAAATGTTACACAAA
____________________________________________________________
consensus CTAATAATTTGATAGAACACAACATAATATAGGAAATTGGATAGCAAAATGTTACACAAA
. : . : . : . : . : . :
rJMSF024M10- TGTTGGGGGCATACAAAACAATCCTTTCTAACTGATATCTTCTTCATCTGCAGTTGCTCC
rJMSF032F07- TGTTGGGGGCATACAAAACAATCCTTTCTAACTGATATCTTCTTCATCTGCAGTTGCTCC
rJMSF024A21- TGTTGGGGGCATACAAAACAATCCTTTCTAACTGATATCTTCTTCATCTGCAGTTGCTCC
____________________________________________________________
consensus TGTTGGGGGCATACAAAACAATCCTTTCTAACTGATATCTTCTTCATCTGCAGTTGCTCC
. : . : . : . : . : . :
rJMSF024M10- TTTGCTAGCATAGATAAAATAATCTCTGCTCCTCTGCTAAGATGCCACTACTCATGCCTT
rJMSF032F07- TTTGCTAGCATAGATAAAATAATCTCTGCTCCTCTGCTAAGATGCCACTACTCATGCCTT
rJMSF024A21- TTTGCTAGCATAGATAAAATAATCTCTGCTCCTCTGCTAAGATGCCACTACTCATGCCTT
____________________________________________________________
consensus TTTGCTAGCATAGATAAAATAATCTCTGCTCCTCTGCTAAGATGCCACTACTCATGCCTT
. : . : . : . : . : . :
rJMSF024M10- TCCTCTCTCTTTCTTCATTAGTTGTACAAACTCCCCAAATACATTATCTGAGTCATGAGG
rJMSF032F07- TCCTCTCTCTTTCTTCATTAGTTGTACAAACTCCCCAAATACATTATCTGAGTCATGAGG
rJMSF024A21- TCCTCTCTCTTTCTTCATTAGTTGTACAAACTCCCCAAATACATTATCTGAGTCATGAGG
____________________________________________________________
consensus TCCTCTCTCTTTCTTCATTAGTTGTACAAACTCCCCAAATACATTATCTGAGTCATGAGG
. : . : . : . : . : . :
rJMSF024M10- CCCGGGAGATGCCTCAGGATGGTATTGCAGTGCCATCAACTTTTGTTGGGGGAAGGCAAG
rJMSF032F07- CCCGGGAGATGCCTCAGGATGGTATTGCAGTGCCATCAACTTTTGTTGGGGGAAGGCAAG
rJMSF024A21- CCCGGGAGATGCCTCAGGATGGTATTGCAGTGCCATCAACTTTTGTTGGGGGAAGGCAAG
____________________________________________________________
consensus CCCGGGAGATGCCTCAGGATGGTATTGCAGTGCCATCAACTTTTGTTGGGGGAAGGCAAG
. : . : . : . : . : . :
rJMSF024M10- ACCAGCACAGCTTCCATCGTTCAAATTGATATGCGTTACCTCTACGCCTTCAGGAAGTGA
rJMSF032F07- ACCAGCACAGCTTCCATCGTTCAAATTGATATGCGTTACCTCTACGCCTTCAGGAAGTGA
rJMSF024A21- ACCAGCACAGCTTCCATCGTTCAAATTGATATGCGTTACCTCTACGCCTTCAGGAAGTGA
____________________________________________________________
consensus ACCAGCACAGCTTCCATCGTTCAAATTGATATGCGTTACCTCTACGCCTTCAGGAAGTGA
. : . : . : . : . : . :
rJMSF024M10- CTTGGGATCAACAGCATAATTGTGATTCTGGGCGCTAATCTCAACACTGCCATTGCGAAG
rJMSF032F07- CTTGGGATCAACAGCATAATTGTGATTCTGGGCGCTAATCTCAACACTGCCATTGCGAAG
rJMSF024A21- CTTGGGATCAACAGCATAATTGTGATTCTGGGCGCTAATCTCAACACTGCCATTGCGAAG
____________________________________________________________
consensus CTTGGGATCAACAGCATAATTGTGATTCTGGGCGCTAATCTCAACACTGCCATTGCGAAG
. : . : . : . : . : . :
rJMSF024M10- GTTACGAACTGGATGATTCCCACCATGGTGACCAAACTTCATTTTAAATGTTCTACCCCC
rJMSF032F07- GTTACGAACTGGATGATTCCCACCATGGTGACCAAACTTCATTTTAAATGTTCTACCCCC
rJMSF024A21- GTTACGAACTGGATGATTCCCACCATGGTGACCAAACTTCATTTTAAATGTTCTACCCCC
____________________________________________________________
consensus GTTACGAACTGGATGATTCCCACCATGGTGACCAAACTTCATTTTAAATGTTCTACCCCC
. : . : . : . : . : . :
rJMSF024M10- CAAAGCTTGGCCAAGCAACTGATGGCCCATACAAATGCCAAAGACAGGAACCTTTCCAAT
rJMSF032F07- CAAAGCTTGGCCAAGCAACTGATGGCCCATACAAATGCCAAAGACAGGAACCTTTCCAAT
rJMSF024A21- CAAAGCTTGGCCAAGCAACTGATGGCCCATACAAATGCCAAAGACAGGAACCTTTCCAAT
____________________________________________________________
consensus CAAAGCTTGGCCAAGCAACTGATGGCCCATACAAATGCCAAAGACAGGAACCTTTCCAAT
. : . : . : . : . : . :
rJMSF024M10- TATTTCTTTTACCGTTTCAACAGCATAAGGAACTGCAGAGGGGTCCCCTGGACCATTGCT
rJMSF032F07- TATTTCTTTTACCGTTTCAACAGCATAAGGAACTGCAGAGGGGTCCCCTGGACCATTGCT
rJMSF024A21- TATTTCTTTTACCGTTTCAACAGCATAAGGAACTGCAGAGGGGTCCCCTGGACCATTGCT
____________________________________________________________
consensus TATTTCTTTTACCGTTTCAACAGCATAAGGAACTGCAGAGGGGTCCCCTGGACCATTGCT
. : . : . : . : . : . :
rJMSF024M10- GAAAAGGACCCCATCAGGTTTCATCTTCNAAGTTTCAGATGCAGGCCATGTTGAAGGA
rJMSF032F07- G-AAAGGACCCCATCAGGTTTCATCTTC-AAGTTTCAGATGCAGGCCATGTTGAAGGANC
rJMSF024A21- GAAAAGGACCCCATCAGGTTTCATCTTCAAAGTTTCAGATGCAGGCCATGTTGAAGGAAC
____________________________________________________________
consensus GAAAAGGACCCCATCAGGTTTCATCTTCAAAGTTTCAGATGCAGGCCATGTTGAAGGAAC
. : . : . : . : . : . :
rJMSF032F07- AACAGTGATTTTACAGCCATAGGATGCTAATCTCCTTAGAATATTTTGCTGGATACCAAA
rJMSF024A21- AACAGTGATTTTACAGCCATAGGATGCTAATCTCCTTAGAATATTTTGCTTGATACCAAA
____________________________________________________________
consensus AACAGTGATTTTACAGCCATAGGATGCTAATCTCCTTAGAATATTTTGCTTGATACCAAA
. : . : . : . : . : . :
rJMSF032F07- ATCATATGCAACCACATGGTAA
rJMSF024A21- ATCATATGCAACCACATTGTAAGTTTCTTGGCTCCTTCCATTAATGTTAAAATCCCATGC
JMSF024A21+ GGCTTCTTCCATTAATGTTAAAATCCCATGC
____________________________________________________________
consensus ATCATATGCAACCACATTGTAAGTTTCTTGGCTTCTTCCATTAATGTTAAAATCCCATGC
. : . : . : . : . : . :
rJMSF024A21- TGACCGAGTTTTATCAACCCAT
JMSF024A21+ TGACCGAGTTTTATCAACCCATTCATAAGGGGCCTTACAGGAAACACCACTAATTAAATC
JMSF024M10+ CAGGAAACACCACTAATTAAATC
____________________________________________________________
consensus TGACCGAGTTTTATCAACCCATTCATAAGGGGCCTTACAGGAAACACCACTAATTAAATC
. : . : . : . : . : . :
JMSF024A21+ CACTCCGACAATGTCCCATGTGCGGGACATTTCCAGAAGTTCCTCATCTGTTTTATGTTC
JMSF024M10+ CACTCCGACAATGTCCCATGTGCGGGACATTTCCAGAAGTTCCTCATCTGTTTTATGTTC
JMSF032F07+ CCGACAATGTCCCATGTGCGGGACATTTCCAGAAGTTCCTCATCTGTTTTATGTTC
____________________________________________________________
consensus CACTCCGACAATGTCCCATGTGCGGGACATTTCCAGAAGTTCCTCATCTGTTTTATGTTC
. : . : . : . : . : . :
JMSF024A21+ CTCTGTGGTTAGAACACCAATAAGGCTTCCATCTTCCCTCAATCTCCGAGTAATGGCACG
JMSF024M10+ CTCTGTGGTTAGAACACCAATAAGGCTTCCATCTTCCCTCAATCTCCGAGTAATGGCACG
JMSF032F07+ CTCTGTGGTTAGAACACCAATAAGGCTTCCATCTTCCCTCAATCTCCGAGTAATGGCACG
____________________________________________________________
consensus CTCTGTGGTTAGAACACCAATAAGGCTTCCATCTTCCCTCAATCTCCGAGTAATGGCACG
. : . : . : . : . : . :
JMSF024A21+ AGTGTCAACATCATATATTCCCATTATATTCCTAGAAGCCAAGTAGTCACCAAGCGTCTC
JMSF024M10+ AGTGTCAA---CATATATTCCCATTATATTGCTAGAAGCCAAGTAGTCACCAAGCGTCTC
JMSF032F07+ AGTGTCAACATCATATATTCCCATTATATTCCTAGAAGCCAAGTAGTCACCAAGCGTCTC
____________________________________________________________
consensus AGTGTCAACATCATATATTCCCATTATATTCCTAGAAGCCAAGTAGTCACCAAGCGTCTC
. : . : . : . : . : . :
JMSF024A21+ TGTACATCTCCAATTTGAGGTACTTATACTCAAACTTCTAATTACTAAACCTGCTAGAAA
JMSF024M10+ TGTGCATCTCCAATTTGAGGTACTTATACTCAAACTTCTAATTACTAAACCTGCTAGAAA
JMSF035I05+ TGCTAGAAA
JMSF032F07+ TGTGCATCTCCAATTTGAGGTACTTATACTCAAACTTCTAATTACTAAACCTGCTAGAAA
____________________________________________________________
consensus TGTGCATCTCCAATTTGAGGTACTTATACTCAAACTTCTAATTACTAAACCTGCTAGAAA
. : . : . : . : . : . :
JMSF024A21+ GCATTGTCTAGATTCTTCGTCATCATAATTCACACCAGTGTTGCCAATGTGAGGATTTGT
JMSF024M10+ GCATTGTCTAGATTCTTCGTCATCATAATTCACACCAGTGTTGCCAATGTGAGGATTTGT
JMSF035I05+ GCATTGTCTAGATTCTTCGTCATCATAATTCACACCAGTGTTGCCAATGTGAGGATTTGT
JMSF032F07+ GCATTGTCTAGATTCTTCGTCATCATAATTCACACCAGTGTTGCCAATGTGAGGATTTGT
____________________________________________________________
consensus GCATTGTCTAGATTCTTCGTCATCATAATTCACACCAGTGTTGCCAATGTGAGGATTTGT
. : . : . : . : . : . :
JMSF024A21+ CATCAAGACAAATTGGCCAGCGTAACTAGGGTCTGTAAGGATTTCCTGATACCCTGTTAA
JMSF024M10+ CATCAAGACAAATTGGCCAGCGTAACTAGGGTCTGTAAGGATTTCCTGATACCCTGTTAA
JMSF035I05+ CATCAAGACAAATTGGCCAGCGTAACTAGGGTCTGTAAGGATTTCCTGATACCCTGTTAA
JMSF032F07+ CATCAAGACAAATTGGCCAGCGTAACTAGGGTCTGTAAGGATTTCCTGATACCCTGTTAA
____________________________________________________________
consensus CATCAAGACAAATTGGCCAGCGTAACTAGGGTCTGTAAGGATTTCCTGATACCCTGTTAA
. : . : . : . : . : . :
JMSF024A21+ AGATGTATTGAAAACCACTTCGCCAACTTGGGTCCCAGAAGCACCAAATGATTTCGCCCT
JMSF024M10+ AGATGTATTGAAAACCACTTCGCCAACTTGGGTCCCAGAAGCACCAAATGATTTCGCCCT
JMSF035I05+ AGATGTATTGAAAACCACTTCGCCAACTTGGGTCCCAGAAGCACCAAATGATTTCGCCCT
JMSF032F07+ AGATGTATTGAAAACCACTTCGCCAACTTGGGTCCCAGAAGCACCAAATGATTTCGCCCT
____________________________________________________________
consensus AGATGTATTGAAAACCACTTCGCCAACTTGGGTCCCAGAAGCACCAAATGATTTCGCCCT
. : . : . : . : . : . :
JMSF024A21+ CCAAATTGAACCATCCTCAAGGACAAGTCGTGCATCTGCCACCTTCCACGGCCTCTCTAC
JMSF024M10+ CCAAATTGAACCATCCTCAAGGACAAGTCGTGCATCTGCCACCTTCCACGGCCTCTCTAC
JMSF035I05+ CCAAATTGAACCATCCTCAAGGACAAGTCGTGCATCTGCCACCTTCCACGGCCTCTCTAC
JMSF032F07+ CCAAATTGAACCATCCTCAAGGACAAGTCGTGCATCTGCCACCTTCCACGGCCTCTCTAC
____________________________________________________________
consensus CCAAATTGAACCATCCTCAAGGACAAGTCGTGCATCTGCCACCTTCCACGGCCTCTCTAC
. : . : . : . : . : . :
JMSF024A21+ CACACCTGAAGAAGGAGCGGCGGAAGAAGAGGAGCACTTGACCGTAAAAGCCCTAACTTT
JMSF024M10+ CACACCTGAAGAAGGAGCGGCGGAAGAAGAGGAGCACTTGACCGTAAAAGCCCTAACTTT
JMSF035I05+ CACACCTGAAGAAGGAGCGGCGGAAGAAGAGGAGCACTTGACCGTAAAAGCCCTAACTTT
JMSF032F07+ CACACCTGAAGAAGGAGCGGCGGAAGAAGAGGAGCACTTGACCGTAAAAGCCCTAACTTT
____________________________________________________________
consensus CACACCTGAAGAAGGAGCGGCGGAAGAAGAGGAGCACTTGACCGTAAAAGCCCTAACTTT
. : . : . : . : . : . :
JMSF024A21+ CGATAGAGGTTTGAGATAAATC
JMSF024M10+ CGATAGAGGTTTGAGATAAATCAGAGAATTTTGTATTGCTACGGAGGGATTATGAGTTCT
JMSF035I05+ CGATAGAGGTTTGAGATAAATCAGAGAATTTTGTANTGCTACGGAGGGATTATGAGTTCT
JMSF032F07+ CGATAGAGGTTTGAGATAAATCAGAGAATTTTGTATTGCTACGGAGGGATTATGAGTTCT
____________________________________________________________
consensus CGATAGAGGTTTGAGATAAATCAGAGAATTTTGTATTGCTACGGAGGGATTATGAGTTCT
. : . : . : . : . : . :
JMSF024M10+ CAGAGCACAATCCATGGCTGGGCTGCTTTCTGATTCTGCTACTCTCGCTGTTTGT
JMSF035I05+ CAGAGCACAATCCATGGCTGGGCTGCTTTCTGATTCTGCTACTCTCGCTGTTTGT
JMSF032F07+ CAGAGCACAATCCATGGCTGGGCTGCTTTCTGATTCTGCTACTCTCGCTGTTTGTGCTTC
____________________________________________________________
consensus CAGAGCACAATCCATGGCTGGGCTGCTTTCTGATTCTGCTACTCTCGCTGTTTGTGCTTC