| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013D03 | Sequence | 541 | 005169 (5) | ref|XP_009592302.1| | 9e-99 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | 689 | 002555 (3) | ref|XP_009592302.1| | 7e-86 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor |
| JMFF014M07 | Sequence | 513 | 005169 (5) | ref|XP_009592302.1| | 2e-91 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | 702 | 002555 (3) | emb|CDP07184.1| | 7e-83 | unnamed protein product [Coffea canephora] |
| JMFS158A09 | Sequence | 429 | 005169 (5) | ref|XP_009592302.1| | 1e-75 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | |||||
| JMSF005D21 | Sequence | 365 | 005169 (5) | gb|EYU37491.1| | 2e-55 | hypothetical protein MIMGU_mgv1a002271mg [Erythranthe guttata] | |||||
| JMSF031N12 | Sequence | 584 | 005169 (5) | ref|XP_009592302.1| | 8e-79 | PREDICTED: conserved oligomeric Golgi complex subunit 6 [Nicotiana tomentosifor | 751 | 002555 (3) | emb|CDP07184.1| | 5e-93 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF013D03+ AGGAGCACTTTGCAGTTTGCATGTATTTCTTGAACATGAGCAAGTGCCTTGAAGAAATT
JMFF014M07+ CTTGAACATGAGCAAGTGCCTTGAAGAAATT
____________________________________________________________
consensus AGGAGCACTTTGCAGTTTGCATGTATTTCTTGAACATGAGCAAGTGCCTTGAAGAAATT
. : . : . : . : . : . :
JMFF013D03+ TTCATTAAGGTCTTCCTCCCTTAGTGCATTTATCTCCTCATTTGATAGTTGATAATCACG
JMFF014M07+ TTCATTAAGGTCTTCCTCCCTTAGTGCATTTATCTCCTCATTTGATAGTTGATAATCACG
JMFS158A09+ CCTCATTTGATAGTTGATAATCACG
JMSF031N12+ TCCCTTAGTGCATTTATCTCCTCATTTGATAGTTGATAATCACG
____________________________________________________________
consensus TTCATTAAGGTCTTCCTCCCTTAGTGCATTTATCTCCTCATTTGATAGTTGATAATCACG
. : . : . : . : . : . :
JMFF013D03+ TAGAAAGCAAGACACTATCTCTTGCCTCTGAGTAGTAATTTCAAGTTCCTGTTTCAGCCT
JMFF014M07+ TAGAAAGCAAGACACTATCTCTTGCCTCTGAGTAGTAATTTCAAGTTCCTGTTTCAGCCT
JMFS158A09+ TAGAAAGCAAGACACTATCTCTTGCCTCTGAGTAGTAATTTCAAGTTCCTGTTTCAGCCT
JMSF031N12+ TAGAAAGCAAGACACTATCTCTTGCCTCTGAGTAGTAATTTCAAGTTCCTGTTTCAGCCT
____________________________________________________________
consensus TAGAAAGCAAGACACTATCTCTTGCCTCTGAGTAGTAATTTCAAGTTCCTGTTTCAGCCT
. : . : . : . : . : . :
JMFF013D03+ CTCTGTAGTACTAATAATATCACCAGTGGTGGCATTGCAACTGTTTAAAGCCAAAGCAAT
JMFF014M07+ CTCTGTAGTACTAATAATATCACCAGTGGTGGCATTGCAACTGTTTAAAGCCAAAGCAAT
JMFS158A09+ CTCTGTAGTACTAATAATATCACCAGTGGTGGCATTGCAACTGTTTAAAGCCAAAGCAAT
JMSF005D21+ TCTGTAGTACTAATAATATCACCAGTGGTGGCATTGCAACTGTTTAAAGCCAAAGCAAT
JMSF031N12+ CTCTGTAGTACTAATAATATCACCAGTGGTGGCATTGCAACTGTTTAAAGCCAAAGCAAT
____________________________________________________________
consensus CTCTGTAGTACTAATAATATCACCAGTGGTGGCATTGCAACTGTTTAAAGCCAAAGCAAT
. : . : . : . : . : . :
JMFF013D03+ TTTGTCACAGCACTCGGCTAGCGCATTGACTTCTTCTTCCACCTGATCCAAGGCCTTCTG
JMFF014M07+ TTTGTCACAGCACTCGGCTAGCGCATTGACTTCTTCTTCCACCTGATCCAAGGCCTTCTG
JMFS158A09+ TTTGTCACAGCACTCGGCTAGCGCATTGACTTCTTCTTCCACCTGATCCAAGGCCTTCTG
JMSF005D21+ TTTGTCACAGCACTCGGCTAGCGCATTGACTTCTTCTTCCACCTGATCCAAGGCCTTCTG
JMSF031N12+ TTTGTCACAGCACTCGGCTAGCGCATTGACTTCTTCTTCCACCTGATCCAAGGCCTTCTG
____________________________________________________________
consensus TTTGTCACAGCACTCGGCTAGCGCATTGACTTCTTCTTCCACCTGATCCAAGGCCTTCTG
. : . : . : . : . : . :
JMFF013D03+ AGCGGAAGAGGAGGCGAGGAGGAACTCCTGATTGATGGATAGCGCGCGCTTCTCGATAGT
JMFF014M07+ AGCGGAAGAGGAGGCGAGGAGGAACTCCTGATTGATGGATAGCGCGCGCTTCTCGATAGT
JMFS158A09+ AGCGGAAGAGGAGGCGAGGAGGAACTCCTGATTGATGGATAGCGCGCGCTTCTCGATAGT
JMSF005D21+ AGCGGAAGAGGAGGCGAGGAGGAACTCCTGATTGATGGATAGCGCGCGCTTCTCGATAGT
JMSF031N12+ AGCGGAAGAGGAGGCGAGGAGGAACTCCTGATTGATGGATAGCGCGCGCTTCTCGATAGT
____________________________________________________________
consensus AGCGGAAGAGGAGGCGAGGAGGAACTCCTGATTGATGGATAGCGCGCGCTTCTCGATAGT
. : . : . : . : . : . :
JMFF013D03+ AGATCTGAGGTTCCGGCGACCGTGAGCGGTGTTTTCTGTGTAGAAAGTCGAGAGAGTGTT
JMFF014M07+ AGATCTGAGGTTCCGGCGACCGTGAGCGGTGTTTTCTGTGTAGAAAGTCGAGAGAGTGTT
JMFS158A09+ AGATCTGAGGTTCCGGCGACCGTGAGCGGTGTTTTCTGTGTAGAAAGTCGAGAGAGTGTT
JMSF005D21+ AGATCTGAGGTTCCGGCGACCGTGAGCGGTGTTTTCTGTGTAGAAAGTCGAGAGAGTGTT
JMSF031N12+ AGATCTGAGGTTCCGGCGACCGTGAGCGGTGTTTTCTGTGTAGAAAGTCGAGAGAGTGTT
____________________________________________________________
consensus AGATCTGAGGTTCCGGCGACCGTGAGCGGTGTTTTCTGTGTAGAAAGTCGAGAGAGTGTT
. : . : . : . : . : . :
JMFF013D03+ GAGAGAAGCAAGTAGATCCGGCGTGTCTGTACGGGTCTCCAATACTTTCTTCAGCTTCCG
JMFF014M07+ GAGAGAAGCAAGTAGATCCGGCGTGTCTGTACGGGTCTCCAATACTTTCTTCAGCTTCCG
JMFS158A09+ GAGAGAAGCAAGTAGATCCGGCGTGTCTGTACGGGTCTCCAATACTTTCTTCAGCTTCCG
JMSF005D21+ GAGAGAAGCAAGTAGATCCGGCGTGTCTGTACGGGTCTCCAATACTTTCTTCAGCTTCCG
JMSF031N12+ GAGAGAAGCAAGTAGATCCGGCGTGTCTGTACGGGTCTCCAATACTTTCTTCAGCTTCCG
____________________________________________________________
consensus GAGAGAAGCAAGTAGATCCGGCGTGTCTGTACGGGTCTCCAATACTTTCTTCAGCTTCCG
. : . : . : . : . : . :
JMFF013D03+ GGATAGCCCTGGTGCCAATGCCGTCGCCGTCCCCATTCTTTGCCTCTATCTCTATCTCTC
JMFF014M07+ GGATAGCCCTGGTGCCAATGCCGTCGCCGTCCCCATTCTTTGCCTCTATCTCTATCTCTC
JMFS158A09+ GGATAGCCCTGGTGCCAATGCCGTCGCCGTCCCCATTCTTTGCC
JMSF005D21+ GGATAGCCCTGGTGCCAATGCCGTCGCCGTCCCCATTCTTTGCCTCTATCTCTATCTCTC
JMSF031N12+ GGATAGCCCTGGTGCCAATGCCGTCGCCGTCCCCATTCTTTGCCTCTATCTCTATCTCTC
____________________________________________________________
consensus GGATAGCCCTGGTGCCAATGCCGTCGCCGTCCCCATTCTTTGCCTCTATCTCTATCTCTC
. : . : . : . : . : . :
JMFF013D03+ TT
JMFF014M07+ TT
JMSF005D21+ TT
JMSF031N12+ TTTGTCTGTAATTCTGTATTCTATAGCTTCATATATACACAGTTGTAAATTTTATGATAA
____________________________________________________________
consensus TTTGTCTGTAATTCTGTATTCTATAGCTTCATATATACACAGTTGTAAATTTTATGATAA
. : . : . : . : . : . :
JMSF031N12+ TCAGAAGTGATCACAAATGGTAGAACTGTTTCTTCTTCGGTTCTTCCCCAGTGTTTCTCC
____________________________________________________________
consensus TCAGAAGTGATCACAAATGGTAGAACTGTTTCTTCTTCGGTTCTTCCCCAGTGTTTCTCC