Contig 005168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003K24Sequence330005168 (3)emb|CDP13802.1|3e-22unnamed protein product [Coffea canephora]370014104 (3)
JMSF031L22Sequence636005168 (3)ref|XP_009775662.1|2e-85PREDICTED: ribonuclease 3-like protein 2 [Nicotiana sylvestris]518014104 (3)ref|XP_009608972.1|4e-21PREDICTED: ribonuclease 3-like protein 2 isoform X2 [Nicotiana tomentosiformis]
JMSF046B24Sequence679005168 (3)ref|XP_009775662.1|2e-97PREDICTED: ribonuclease 3-like protein 2 [Nicotiana sylvestris]786014104 (3)ref|XP_009775662.1|3e-32PREDICTED: ribonuclease 3-like protein 2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF046B24+                                           TTGGCAAAGTTCATAAAGCATCGTTACA
                      ____________________________________________________________
consensus                                             TTGGCAAAGTTCATAAAGCATCGTTACA
 
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JMSF046B24+           GGCTGCGGTTGGTGTTGTAGCATCTCAAGGGTGATAATGGGATCCAGTAGGCCTCTAAAG
JMSF031L22+                                   TCAAGGGTGATAATGGGATCCAGTAGGCCTCTAAAG
                      ____________________________________________________________
consensus             GGCTGCGGTTGGTGTTGTAGCATCTCAAGGGTGATAATGGGATCCAGTAGGCCTCTAAAG
 
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JMSF046B24+           ATCACCCATAGCTCCTTCAAATCGAAGTCACAATCCACATATACAGCGGCGGCAATGGAC
JMSF031L22+           ATCATCCATAGCTCCTTCAAATCGAAGTCACAATCCACATATACAGCGGCGGCAATGGAC
                      ____________________________________________________________
consensus             ATCATCCATAGCTCCTTCAAATCGAAGTCACAATCCACATATACAGCGGCGGCAATGGAC
 
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JMSF046B24+           TCCACGATATCTGCAAGGACTTTGGGTGCTTTCATAGCGCCGCCATAGAACTCAGTTTCT
JMSF031L22+           TCCACGATATCTGCAAGGACTTTGGGTGCTTTCATAGCGCCGCCATAGAACTCAGTTTCT
                      ____________________________________________________________
consensus             TCCACGATATCTGCAAGGACTTTGGGTGCTTTCATAGCGCCGCCATAGAACTCAGTTTCT
 
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JMSF046B24+           TGCTCTTCTTGGACCACAAGCACAAACTCCTTCACCCTTTCATCGAGACCGGTGGCATTG
JMSF031L22+           TGCTCTTCTTGGACCACAAGCACAAACTCCTTCACCCTTTCATCGAGACCGGTGGCATTG
                      ____________________________________________________________
consensus             TGCTCTTCTTGGACCACAAGCACAAACTCCTTCACCCTTTCATCGAGACCGGTGGCATTG
 
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JMSF046B24+           TGGCGGACATATTTATAAAGGCTGTGGCGGACGGCGACGCGCGCGAGCTTCTCGGTGCTG
JMSF031L22+           TGGCGGACATATTTATAAAGGCTGTGGCGGACGGCGACGCGCGCGAGCTTCTCGGTGCTG
                      ____________________________________________________________
consensus             TGGCGGACATATTTATAAAGGCTGTGGCGGACGGCGACGCGCGCGAGCTTCTCGGTGCTG
 
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JMSF046B24+           ATGTTGGCGGCGCGTAAGAGGGAGAGTTGACCGGGGTCAAGCTCGGGATAAGCTAAGAAC
JMSF003K24+                                         CCGGGGTCAAGCTCGGGATAAGCTAAGAAC
JMSF031L22+           ATGTTGGCGGCGCGTAAGAGGGAGAGTTGACCGGGGTCAAGCTCGGGATAAGCTAAGAAC
                      ____________________________________________________________
consensus             ATGTTGGCGGCGCGTAAGAGGGAGAGTTGACCGGGGTCAAGCTCGGGATAAGCTAAGAAC
 
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JMSF046B24+           ACGAAATTGGTGATTGCTAAGCCCAGAGCCATGTCGCCGAGGAACTCGAGACGCTGGTAA
JMSF003K24+           ACGAAATTGGTGATTGCTAAGCCCAGAGCCATGTCGCCGAGGAACTCGAGACGCTGGTAA
JMSF031L22+           ACGAAATTGGTGATTGCTAAGCCCAGAGCCATGTCGCCGAGGAACTCGAGACGCTGGTAA
                      ____________________________________________________________
consensus             ACGAAATTGGTGATTGCTAAGCCCAGAGCCATGTCGCCGAGGAACTCGAGACGCTGGTAA
 
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JMSF046B24+           GAAGCCGATTCGGTGTAGGAAGAGTGAGTCAGAGCCTCTTCTAGAAGCTTCCTGTTCTTG
JMSF003K24+           GAAGCCGATTCGGTGTAGGAAGAGTGAGTCAGAGCCTCTTCTAGAAGCTTCCTGTTCTTG
JMSF031L22+           GAAGCCGATTCGGTGTAGGAAGAGTGAGTCAGAGCCTCTTCTAGAAGCTTCCTGTTCTTG
                      ____________________________________________________________
consensus             GAAGCCGATTCGGTGTAGGAAGAGTGAGTCAGAGCCTCTTCTAGAAGCTTCCTGTTCTTG
 
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JMSF046B24+           AATTGATACTGCAGCAGCTGCTCCACCGCCGCCACAGACGCATCCATGCTCGCCATCTCC
JMSF003K24+           AATTGATACTGCAGCAGCTGCTCCACCGCCGCCACAGACGCATCCATGCTCGCCATCTCC
JMSF031L22+           AATTGATACTGCAGCAGCTGCTCCACCGCCGCCACAGACGCATCCATGCTCGCCATCTCC
                      ____________________________________________________________
consensus             AATTGATACTGCAGCAGCTGCTCCACCGCCGCCACAGACGCATCCATGCTCGCCATCTCC
 
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JMSF046B24+           TCCTCCTCCGACTCCAACCCCGGCAGCGCGTAGGCGCACGTCAACCTAAAGGGGTTCATG
JMSF003K24+           TCCTCCTCCGACTCCAACTCCGGCAGCGCGTAGGCGCACGTCAACCTAAAGGGGTTCATG
JMSF031L22+           TCCTCCTCCGACTCCAACTCCGGCAGCGCGTAGGCGCACGTCAACCTAAAGGGGTTCATG
                      ____________________________________________________________
consensus             TCCTCCTCCGACTCCAACTCCGGCAGCGCGTAGGCGCACGTCAACCTAAAGGGGTTCATG
 
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JMSF046B24+           CTTCCAGTTCAGTACTATACACAGTTGTATGTAACGATGCATAAATAGAT          
JMSF003K24+           CTTCCAGTTCAGTACTATACACAGTTGTATGTAACGATGCATAAATAGATTATACTCCTC
JMSF031L22+           CTTCCAGTTCAGTACTATACACAGTTGTATGTAACGATGCATAAATAGATTATACTCCTC
                      ____________________________________________________________
consensus             CTTCCAGTTCAGTACTATACACAGTTGTATGTAACGATGCATAAATAGATTATACTCCTC