Contig 005161:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031C14Sequence445005161 (3)gb|ETK19805.1|3e-81hypothetical protein H097_06602 [Pseudomonas sp. FH4]
JMSF032L13Sequence430005161 (3)gb|ETK19805.1|2e-76hypothetical protein H097_06602 [Pseudomonas sp. FH4]
JMSF039M11Sequence421005161 (3)gb|ETK19805.1|2e-74hypothetical protein H097_06602 [Pseudomonas sp. FH4]

Alignment

This contig is upended


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JMSF039M11+                                                                    CTG
JMSF032L13+                                                           GTGTCGCCGCTG
JMSF031C14+                                              TTGATCCCGGAACGTGTCGCCGCTG
                      ____________________________________________________________
consensus                                                TTGATCCCGGAACGTGTCGCCGCTG
 
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JMSF039M11+           TAAAGCGGGCGCTGGAGCTTTATCGCCAGGGACTGGGCGCTGGTCGTGCTGCATTGGTTA
JMSF032L13+           TAAAGCGGGCGCTGGAGCTTTATCGCCAGGGACTGGGCGCTGGTCGTGCTGCATTGGTTA
JMSF031C14+           TAAAGCGGGCGCTGGAGCTTTATCGCCAGGGACTGGGCGCTGGTCGTGCTGCATTGGTTA
                      ____________________________________________________________
consensus             TAAAGCGGGCGCTGGAGCTTTATCGCCAGGGACTGGGCGCTGGTCGTGCTGCATTGGTTA
 
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JMSF039M11+           TGCATGAAGAGGGATTCCAGCTCACAGTAGGGGGAATCTCCGGGCTGCAGATATACCGGA
JMSF032L13+           TGCATGAAGAGGGATTCCAGCTCACAGTAGGGGGAATCTCCGGGCTGCAGATATACCGGA
JMSF031C14+           TGCATGAAGAGGGATTCCAGCTCACAGTAGGGGGAATCTCCGGGCTGCAGATATACCGGA
                      ____________________________________________________________
consensus             TGCATGAAGAGGGATTCCAGCTCACAGTAGGGGGAATCTCCGGGCTGCAGATATACCGGA
 
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JMSF039M11+           CGATCAAATTGCCCGCGCTTCGTGGTGTCAAACGTTTGAGCCTTGATGGTGAGAACTACG
JMSF032L13+           CGATCAAATTGCCCGCGCTTCGTGGTGTCAAACGTTTGAGCCTTGATGGTGAGAACTACG
JMSF031C14+           CGATCAAATTGCCCGCGCTTCGTGGTGTCAAACGTTTGAGCCTTGATGGTGAGAACTACG
                      ____________________________________________________________
consensus             CGATCAAATTGCCCGCGCTTCGTGGTGTCAAACGTTTGAGCCTTGATGGTGAGAACTACG
 
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JMSF039M11+           AACTGGAGGAGTATTATCCGCGAATCCTGTCTGATGCTGAATGGAGTGATTTACAGCACC
JMSF032L13+           AACTGGAGGAGTATTATCCGCGAATCCTGTCTGATGCTGAATGGAGTGATTTACAGCACC
JMSF031C14+           AACTGGAGGAGTATTATCCGCGAATCCTGTCTGATGCTGAATGGAGTGATTTACAGCACC
                      ____________________________________________________________
consensus             AACTGGAGGAGTATTATCCGCGAATCCTGTCTGATGCTGAATGGAGTGATTTACAGCACC
 
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JMSF039M11+           TTGCGGGGCAACGATTGCGACGTCGCGGGGCTGGCGAGATACCAGGAATTATAACCGGTG
JMSF032L13+           TTGCGGGGCAACGATTGCGACGTCGCGGGGCTGGCGAGATACCAGGAATTATAACCGGTG
JMSF031C14+           TTGCGGGGCAACGATTGCGACGTCGCGGGGCTGGCGAGATACCAGGAATTATAACCGGTG
                      ____________________________________________________________
consensus             TTGCGGGGCAACGATTGCGACGTCGCGGGGCTGGCGAGATACCAGGAATTATAACCGGTG
 
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JMSF039M11+           TGGGGCTGGCATATTGCGGCTACTGTGGCACAGCGTTGGTGGCGCAAAACATCATGAAAC
JMSF032L13+           TGGGGCTGGCATATTGCGGCTACTGTGGCACAGCGTTGGTGGCGCAAAACATCATGAAAC
JMSF031C14+           TGGGGCTGGCATATTGCGGCTACTGTGGCACAGCGTTGGTGGCGCAAAACATCATGAAAC
                      ____________________________________________________________
consensus             TGGGGCTGGCATATTGCGGCTACTGTGGCACAGCGTTGGTGGCGCAAAACATCATGAAAC
 
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JMSF039M11+           GGCGGCGTTCCGATGGAAGCATCGCAGATGGTAATCGTCGTTTGCAGTGCACTTCTTA  
JMSF032L13+           GGCGGCGTTCCGATGGAAGCATCGCAGATGGTAATCGTCGTTTGCAGTGCACTTCTTA  
JMSF031C14+           GGCGGCGTTCCGATGGAAGCATCGCAGATGGTAATCGTCGTTTGCAGTGCACTTCTTATA
                      ____________________________________________________________
consensus             GGCGGCGTTCCGATGGAAGCATCGCAGATGGTAATCGTCGTTTGCAGTGCACTTCTTATA