Contig 005160:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS015H12Sequence536005160 (3)ref|XP_006367000.1|133PREDICTED: uncharacterized protein LOC102582294 [Solanum tuberosum]
JMSF023A08Sequence681005160 (3)ref|XP_006367000.1|214PREDICTED: uncharacterized protein LOC102582294 [Solanum tuberosum]750009967 (2)ref|XP_009763079.1|243PREDICTED: uncharacterized protein LOC104215037 [Nicotiana sylvestris]
JMSF030N06Sequence638005160 (3)ref|XP_006367000.1|184PREDICTED: uncharacterized protein LOC102582294 [Solanum tuberosum]707009967 (2)ref|XP_009763079.1|238PREDICTED: uncharacterized protein LOC104215037 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS015H12+                             ATCCTGTTCTAGACAACCATGGTGAAGAGTTTCAAAATTCAT
                      ____________________________________________________________
consensus                               ATCCTGTTCTAGACAACCATGGTGAAGAGTTTCAAAATTCAT
 
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JMFS015H12+           ATGTTTTTTACCGATGCAAAAGCCAAAAAACAAAAGAATGTATAATCTTGAGAGGAAAAT
                      ____________________________________________________________
consensus             ATGTTTTTTACCGATGCAAAAGCCAAAAAACAAAAGAATGTATAATCTTGAGAGGAAAAT
 
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JMFS015H12+           CCATGGAAATTTAACGAATCTGTGAGAGAAAGCGAGAAGGGAGAAGGAAAACTCGAAACT
                      ____________________________________________________________
consensus             CCATGGAAATTTAACGAATCTGTGAGAGAAAGCGAGAAGGGAGAAGGAAAACTCGAAACT
 
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JMFS015H12+           ACCTGTGGAGGCAAGCTTCATCGGAGGCCAAGCTCAACGTCATCCTCGCCGCGGCTTCAT
JMSF023A08+            CCTGTGGAGGCAAGCTTCATCGGAGGCCAAGCTCAACGTCATCCTCGCCGCGGCTTCAT
JMSF030N06+            CCTGTGGAGGCAAGCTTCATCGGAGGCCAAGCTCAACGTCATCCTCGCCGCGGCTTCAT
                      ____________________________________________________________
consensus             ACCTGTGGAGGCAAGCTTCATCGGAGGCCAAGCTCAACGTCATCCTCGCCGCGGCTTCAT
 
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JMFS015H12+           CCCGGTCGTAAGCCAGCTGCTCCAGCTGCTTCTCCACGGCGAGCGGGAAATACTCGCGAT
JMSF023A08+           CCCGGTCGTAAGCCAGCTGCTCCAGCTGCTTCTCCACGGCGAGCGGGAAATACTCGCGAT
JMSF030N06+           CCCGGTCGTAAGCCAGCTGCTCCAGCCGCTTCTCCACGGCGAGCGGGAAATACTCGCGAT
                      ____________________________________________________________
consensus             CCCGGTCGTAAGCCAGCTGCTCCAGCTGCTTCTCCACGGCGAGCGGGAAATACTCGCGAT
 
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JMFS015H12+           CGTTCTGGAACACGGTGCTCAAGAACCTTCCCGACGGCGTGGTCGGCTCCAGCGGCGCGT
JMSF023A08+           CGTTCTGGAACACGGTGCTCAAGAACCTTCCCGACGGCGTGGTCGGCTCCAGCGGCGCGT
JMSF030N06+           CGTTCTGGAACACGGTGCTCAAGAACCTTCCCGACGGCGTGGTCGGCTCCAGCGGCGCGT
                      ____________________________________________________________
consensus             CGTTCTGGAACACGGTGCTCAAGAACCTTCCCGACGGCGTGGTCGGCTCCAGCGGCGCGT
 
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JMFS015H12+           TCAACCCACTGAACTCACACTGGCTCCTACTCGCCCGACCGCCACTCGCCGCCACAACCA
JMSF023A08+           TCAACCCACTGAACTCACACTGGCTCCTACTCGCCCGACCGCCACTCGCCGCCACAACCA
JMSF030N06+           TCAACCCACTGAACTCACACTGGCTCNTACTCGCCCGACCGCCACTCGCCGCCACAACCA
                      ____________________________________________________________
consensus             TCAACCCACTGAACTCACACTGGCTCCTACTCGCCCGACCGCCACTCGCCGCCACAACCA
 
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JMFS015H12+           ACGCTCTCCGCCACCCGATTCCGGACCCTCCGACCCGCGAATTCGGGAACCCGAATCTGA
JMSF023A08+           ACGCTCTCCGCCACCCGATTCCGGACCCTCCGACCCGCGAATTCGGGAACCCGAATCTGA
JMSF030N06+           ACGCTCTCCGCCACCCGATTCCGGACCCTCCGACCCGCGAATTCGGGAACCCGAATCTGA
                      ____________________________________________________________
consensus             ACGCTCTCCGCCACCCGATTCCGGACCCTCCGACCCGCGAATTCGGGAACCCGAATCTGA
 
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JMFS015H12+           ACGCCGGCGTCGTCGGCGCCAACACGCTCTTCCCCGCAAAAGGCGAAGAATTGAGAAGGG
JMSF023A08+           ACGCCGGCGTCGTCGGCGCCAACACGCTCTTCCCCGCAAAAGGCGAAGAATTGAGAAGGG
JMSF030N06+           ACGCCGGCGTCGTCGGCGCCAACACGCTCTTCCCCGCAAAAGGCGAAGAATTGAGAAGGG
                      ____________________________________________________________
consensus             ACGCCGGCGTCGTCGGCGCCAACACGCTCTTCCCCGCAAAAGGCGAAGAATTGAGAAGGG
 
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JMFS015H12+           AAGGAGAGAGCCCA                                              
JMSF023A08+           AAGGAGAGAGCCCACAGTCCATTCAACAACCAATAACTGAAATCCACGCAAAAAGAGAAA
JMSF030N06+           AAGGAGAGAGCCCACAGTCCATTCAACAACCAATAACTGAAATCCACGCAAAAAGAGAAA
                      ____________________________________________________________
consensus             AAGGAGAGAGCCCACAGTCCATTCAACAACCAATAACTGAAATCCACGCAAAAAGAGAAA
 
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JMSF023A08+           GAAAAAGATAAGCGCAGTACAAGAGAGAGAGAGAGAGAGATTATAAGGAATCTTGTATGG
JMSF030N06+           GAAAAAGATAAGCGCAGTACAAGAGAGAGAGAGAGAGAGATTATAAGGAATCTTGTATGG
                      ____________________________________________________________
consensus             GAAAAAGATAAGCGCAGTACAAGAGAGAGAGAGAGAGAGATTATAAGGAATCTTGTATGG
 
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JMSF023A08+           GGATTGGGAGCTGAGAGTGATAAGGTGGTGATAACCAACGATCAATAACGTTATCAGTCC
JMSF030N06+           GGATTGGGAGCTGAGAGTGATAAGGTGGTGATAACCAACGATCAATAACGTTATCAGTCC
                      ____________________________________________________________
consensus             GGATTGGGAGCTGAGAGTGATAAGGTGGTGATAACCAACGATCAATAACGTTATCAGTCC