Contig 005144:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016D13Sequence616005144 (13)gb|AEA50874.1|1e-28lhy1 [Populus tremula]786008198 (5)dbj|BAK19069.1|8e-92late elongated hypocotyl homolog [Ipomoea nil]
JMFS001H03Sequence514005144 (13)ref|XP_007139035.1|1e-41hypothetical protein PHAVU_009G259600g [Phaseolus vulgaris] ref|XP_007139036.1|
JMFS069H10Sequence621005144 (13)gb|AEA50874.1|1e-35lhy1 [Populus tremula]
JMFS080C02Sequence617005144 (13)ref|XP_007139035.1|1e-29hypothetical protein PHAVU_009G259600g [Phaseolus vulgaris] ref|XP_007139036.1|
JMFS085C07Sequence601005144 (13)gb|AEA50874.1|2e-32lhy1 [Populus tremula]
JMFS115D02Sequence563005144 (13)gb|AEA50874.1|1e-24lhy1 [Populus tremula]
JMFS141A07Sequence293005144 (13)
JMFS144A12Sequence624005144 (13)gb|AEA50874.1|2e-40lhy1 [Populus tremula]
JMFS144F01Sequence602005144 (13)gb|AEA50874.1|5e-40lhy1 [Populus tremula]
JMFS147A03Sequence644005144 (13)gb|AEA50874.1|7e-40lhy1 [Populus tremula]
JMFS151A01Sequence620005144 (13)gb|AEA50874.1|6e-40lhy1 [Populus tremula]
JMFS167F07Sequence619005144 (13)gb|AEA50874.1|6e-42lhy1 [Populus tremula]
JMSF029M05Sequence641005144 (13)ref|XP_007139035.1|9e-24hypothetical protein PHAVU_009G259600g [Phaseolus vulgaris] ref|XP_007139036.1| 645008198 (5)dbj|BAK19069.1|4e-74late elongated hypocotyl homolog [Ipomoea nil]

Alignment

This contig is upended


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JMFS001H03+                                                        TGAACAGCAACATAA
                      ____________________________________________________________
consensus                                                          TGAACAGCAACATAA
 
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JMFS001H03+           ATGTCAATATACACCTTTGTAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
JMFS167F07+                           TTGTAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
JMFS144F01+                            TGTAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
JMFS144A12+                           TTGTAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
JMFS151A01+                              TAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
JMFS085C07+                                                        ATCTGCACAGCAGTC
JMFS069H10+                                             CATGACTTCGGATCTGCACAGCAGTC
JMFS147A03+                              TAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
JMFS080C02+                                                               CAGCAGTC
                      ____________________________________________________________
consensus             ATGTCAATATACACCTTTGTAAAAAACTTTTGTGCATGACTTCGGATCTGCACAGCAGTC
 
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JMFS001H03+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS167F07+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS144F01+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS144A12+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS151A01+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS085C07+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS115D02+                            TTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS069H10+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS147A03+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFS080C02+           TTGGTGCCAATATGTTCTTCAATACGTGNCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMFF016D13+           TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
JMSF029M05+                             TCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
                      ____________________________________________________________
consensus             TTGGTGCCAATATGTTCTTCAATACGTTGCCAAGCCCGCCCATAGAGTTTCAAAGCTTCA
 
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JMFS001H03+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS167F07+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS144F01+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS144A12+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS151A01+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS085C07+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS115D02+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS069H10+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS147A03+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFS080C02+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMFF016D13+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
JMSF029M05+           AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
                      ____________________________________________________________
consensus             AGAAACCTGTTATGCTCCTCTTCTGTCCATCGCTCACGCTGCTTAGTGATAGTATAAGGC
 
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JMFS001H03+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS167F07+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS144F01+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS144A12+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS151A01+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS085C07+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS115D02+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS069H10+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS147A03+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFS080C02+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMFF016D13+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
JMSF029M05+           TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
                      ____________________________________________________________
consensus             TTCCTAGTCTTAATGACAAGTTCCTCTCCAGAGGAGTAAGTGTCCATCAAAATAGAAGAC
 
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JMFS001H03+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS167F07+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS144F01+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS144A12+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS151A01+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS085C07+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS115D02+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS069H10+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS147A03+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFS080C02+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMFF016D13+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
JMSF029M05+           CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
                      ____________________________________________________________
consensus             CAGTTAGGGGTTGTTTGCGCTGCTTCAAATCCTCACGTACAAGCAGAGGATATACAACAA
 
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JMFS001H03+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS167F07+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS144F01+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS144A12+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS151A01+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS085C07+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS115D02+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS141A07+                                                              GAAGAAATA
JMFS069H10+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS147A03+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFS080C02+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMFF016D13+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
JMSF029M05+           GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
                      ____________________________________________________________
consensus             GCCATCTTTCAACTCTCGCGACAATATCAACATCATCATCATCAAACACAAGAAGAAATA
 
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JMFS001H03+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAACAGAACCGCG
JMFS167F07+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS144F01+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS144A12+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS151A01+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS085C07+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS115D02+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS141A07+           GCTTAGCCGTGGGGGTATGCTCAAGTGCCTGGCAAGGTAATACTACAAAAC-GAACCGCG
JMFS069H10+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS147A03+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFS080C02+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMFF016D13+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
JMSF029M05+           GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
                      ____________________________________________________________
consensus             GCTTAGCCGTGGTGGTATGCTCAAGTACCTGACAAGGTAATACTACAAAAC-GAACCGCG
 
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JMFS001H03+           TGATGCCTAAACCTTGGGAGATAGCCATGTT-AAGCAGCAGGAAGAGGTTG-AGAGGCTC
JMFS167F07+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS144F01+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS144A12+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS151A01+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS085C07+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS115D02+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS141A07+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS069H10+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS147A03+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFS080C02+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMFF016D13+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
JMSF029M05+           TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
                      ____________________________________________________________
consensus             TGATGCCTAAACCTTGGGAGATAGCCATGTTGAAGCAGCAGGAAGAGGTTGTAGAGGCTC
 
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JMFS001H03+           CGGACATGCAGTGACAGAATC                                       
JMFS167F07+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS144F01+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS144A12+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS151A01+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS085C07+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS115D02+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS141A07+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS069H10+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS147A03+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFS080C02+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMFF016D13+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
JMSF029M05+           CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
                      ____________________________________________________________
consensus             CGGACATGCAGTGACAGAATCATCCGGCACTCGTCGGAGAAGTCATAGTTTCCGGCAATG
 
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JMFS167F07+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS144F01+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS144A12+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS151A01+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS085C07+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS115D02+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS141A07+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS069H10+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS147A03+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFS080C02+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMFF016D13+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
JMSF029M05+           GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
                      ____________________________________________________________
consensus             GCGGATCGGAATCTCAGAAATGAATGGGGGGAAAGTATAAATACGGGAACTGGAAGTTGA
 
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JMFS167F07+           ATAAAGGAAAAAGGATGAAATTCACA                                  
JMFS144F01+           ATAAAGGAAAAAGGATGAAA                                        
JMFS144A12+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCA                     
JMFS151A01+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCAC                    
JMFS085C07+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGG             
JMFS115D02+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACT                   
JMFS141A07+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCA               
JMFS069H10+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGGCAGAGAAAA    
JMFS147A03+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGGCAGAGAAAACAGC
JMFS080C02+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGGCAGAGAAAACAGC
JMFF016D13+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGGCAGAGAAAACAGC
JMSF029M05+           ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGGCAGAGAAAACAGC
                      ____________________________________________________________
consensus             ATAAAGGAAAAAGGATGAAATTCACAGAAGGGAAGATCACTGGCAGGCAGAGAAAACAGC
 
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JMFS080C02+           AGAGTGAAGA                                                  
JMFF016D13+           AGAGTGAAGAAAGCGGA                                           
JMSF029M05+           AGAGTGAAGAAAGCGGAGAGGAGAGGAGAAGAGAAGAGAAGAGAAGAGAGAGAGCTGCTC
                      ____________________________________________________________
consensus             AGAGTGAAGAAAGCGGAGAGGAGAGGAGAAGAGAAGAGAAGAGAAGAGAGAGAGCTGCTC