Contig 005141:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS048E12Sequence580005141 (2)ref|XP_004246442.1|9e-88PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Solanum lycopersicu
JMSF029I24Sequence580005141 (2)ref|XP_004246442.1|1e-83PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Solanum lycopersicu719017178ref|XP_009625387.1|2e-109PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Nicotiana tome

Alignment

This contig is upended


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JMFS048E12+                                                                TACCTTC
                      ____________________________________________________________
consensus                                                                  TACCTTC
 
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JMFS048E12+           AATGCCAGTGGCTTTTGCAGTTTCCTTCATTCTATCTAGGAGGAGATTTGTCAAGTAAAA
JMSF029I24+                               TTTCCTTCATTCTATCTAGGAGGAGATTTGTCAAGTAAAA
                      ____________________________________________________________
consensus             AATGCCAGTGGCTTTTGCAGTTTCCTTCATTCTATCTAGGAGGAGATTTGTCAAGTAAAA
 
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JMFS048E12+           ATGACCGAGATGGTTCGTCGCGAATTGCATCTCATATCCATCTTCCGAGAGCTGAAATGG
JMSF029I24+           ATGACCGAGATGGTTCGTCGCGAATTGCATCTCATATCCATCTTCCGAGAGCTGAAATGG
                      ____________________________________________________________
consensus             ATGACCGAGATGGTTCGTCGCGAATTGCATCTCATATCCATCTTCCGAGAGCTGAAATGG
 
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JMFS048E12+           ACAGAACATGATTCCCGCATTGTTTATTAGGATGTTGAGGGGGAGTCTAAGGGCTTTGAA
JMSF029I24+           ACAGAACATGATTCCCGCATTGTTTATTAGGATGTTGAGGGGGAGTCTAAGGGCTTTGAA
                      ____________________________________________________________
consensus             ACAGAACATGATTCCCGCATTGTTTATTAGGATGTTGAGGGGGAGTCTAAGGGCTTTGAA
 
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JMFS048E12+           ATCATCAGCAAATGCCTTGATTGATCTGATTGAGTTGAGGTCAAGTTTCATGATATCAAC
JMSF029I24+           ATCATCAGCAAATGCCTTGATTGATCTGATTGAGTTGAGGTCAAGTTTCATGATATCAAC
                      ____________________________________________________________
consensus             ATCATCAGCAAATGCCTTGATTGATCTGATTGAGTTGAGGTCAAGTTTCATGATATCAAC
 
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JMFS048E12+           TTTAGCTGTTCTGTTGTCTCTCAGGATAAGGTCTTTTGCGTCTTNTGCAGCGTCCGTGTT
JMSF029I24+           TTTAGCTGTTCTGTTGTCTCTCAGGATAAGGTCTTTTGCGTCTTTTGCAGCGTCCGTGTT
                      ____________________________________________________________
consensus             TTTAGCTGTTCTGTTGTCTCTCAGGATAAGGTCTTTTGCGTCTTTTGCAGCGTCCGTGTT
 
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JMFS048E12+           CCTCGCAGCTATGATCACGTGCACTTTCCTTTGGGCTAAAACTCTCACGGTTTCTAACCC
JMSF029I24+           CCTCGCAGCTATGATCACGTGCACTTTCCTTTGGGCTAAAACTCTCACGGTTTCTAACCC
                      ____________________________________________________________
consensus             CCTCGCAGCTATGATCACGTGCACTTTCCTTTGGGCTAAAACTCTCACGGTTTCTAACCC
 
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JMFS048E12+           AATGCCACTTGCACCACCTGTAACAATGGCAGTGAGGTTGGAAGCATGAATGCCCAGAGT
JMSF029I24+           AATGCCACTTGCACCACCTGTAACAATGGCAGTGAGGTTGGAAGCATGAATGCCCAGAGT
                      ____________________________________________________________
consensus             AATGCCACTTGCACCACCTGTAACAATGGCAGTGAGGTTGGAAGCATGAATGCCCAGAGT
 
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JMFS048E12+           GACTTGGTCAGCAGTGGAAGCTGAACCAAACCCACTTGGCCCTGGAATGCCTGTGANTGA
JMSF029I24+           GACTTGGTCAGCAGTGGAAGCTGAACCAAACCCACTTGGCCCTGGAATGCCTGTGATTGA
                      ____________________________________________________________
consensus             GACTTGGTCAGCAGTGGAAGCTGAACCAAACCCACTTGGCCCTGGAATGCCTGTGATTGA
 
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JMFS048E12+           CCTAATCATCNTTCTTAGCTTTCTTTCTTTCTCTGATCTGATCTACAACTAGCAGACAAG
JMSF029I24+           CCTAATCATCTTTCTTAGCTTTCTTTCTTTCTCTGATCTGATCTACAACTAGCAGACAAG
                      ____________________________________________________________
consensus             CCTAATCATCTTTCTTAGCTTTCTTTCTTTCTCTGATCTGATCTACAACTAGCAGACAAG
 
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JMFS048E12+           CCAAAATGGGGTGTGCCTTGAAATAAGGGAAAC                           
JMSF029I24+           CCAAAATGGTGTGTGCCTTGAAATAAGGGAAACTCAATTCTCTCTCAACTTCTTGTGCTC
                      ____________________________________________________________
consensus             CCAAAATGGTGTGTGCCTTGAAATAAGGGAAACTCAATTCTCTCTCAACTTCTTGTGCTC