Contig 005138:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018O06Sequence482005138 (3)gb|AEQ27744.1|4e-24receptor-like protein [Malus domestica]749002992 (3)ref|XP_009772428.1|4e-46PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMSF029C12Sequence663005138 (3)ref|XP_011080440.1|2e-43PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180669002992 (3)ref|XP_009772428.1|4e-39PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
JMSF048D01Sequence743005138 (3)ref|XP_007220752.1|1e-52hypothetical protein PRUPE_ppa025491mg [Prunus persica] gb|EMJ21951.1| hypotheti750002992 (3)ref|XP_009772428.1|4e-36PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180

Alignment

This contig is upended


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JMSF048D01+                                                         GTAGGANCCAAAAG
                      ____________________________________________________________
consensus                                                           GTAGGANCCAAAAG
 
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JMSF048D01+           GGAGGAATAGTTGTGATGATGAAGTGAAGATGAAATGTTAGCAAGACTACAACCAGAGAA
                      ____________________________________________________________
consensus             GGAGGAATAGTTGTGATGATGAAGTGAAGATGAAATGTTAGCAAGACTACAACCAGAGAA
 
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JMSF048D01+           ACGAAGGTGCTGTAAAGAAGGAAGAGCAGAAGTGACCTGTACCCAGTTGGGAGCGTTGCT
                      ____________________________________________________________
consensus             ACGAAGGTGCTGTAAAGAAGGAAGAGCAGAAGTGACCTGTACCCAGTTGGGAGCGTTGCT
 
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JMSF048D01+           TAGATCCACATAGCTCAAGTCCAGTCGCTGGAGATTGGAAAGGCTTGATAACCATTCAAG
                      ____________________________________________________________
consensus             TAGATCCACATAGCTCAAGTCCAGTCGCTGGAGATTGGAAAGGCTTGATAACCATTCAAG
 
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JMSF048D01+           GCTATCAACTTTGAGACCACCAAGAGAGTAATCGGAAAGACTTGGAGTAGTTCTCTGCCC
                      ____________________________________________________________
consensus             GCTATCAACTTTGAGACCACCAAGAGAGTAATCGGAAAGACTTGGAGTAGTTCTCTGCCC
 
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JMSF048D01+           CATCCCCAGGGAGATTTCAAGAAACCCTGAACTTACAGGAGAGGAATAACCAGGCCCCCG
                      ____________________________________________________________
consensus             CATCCCCAGGGAGATTTCAAGAAACCCTGAACTTACAGGAGAGGAATAACCAGGCCCCCG
 
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JMSF048D01+           TATAGTCACCGTGTGTAAGCCTGTGAGATTACCAAGCTGATGGGGAATGATACCTTGGAA
JMSF029C12+                      TGTGTAAACCTGTAAGATTTCCCAGGTGATGAGGAATGTCACCTTCGAA
                      ____________________________________________________________
consensus             TATAGTCACCGTGTGTAAGCCTGTGAGATTTCCCAGGTGATGGGGAATGTTACCTTGGAA
 
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JMSF048D01+           CCCAGCATCGGCTAGATCGAGATATTCCAGATTTAGTAGAGATCCTAGGAAGCCTGGGAT
JMSF018O06+                                                                  GGGAT
JMSF029C12+           TCCAGCTTCTGATAGATCGAGATATTCTAGATTTAGTAGAGATCCTAGGAAGCCTGGGAT
                      ____________________________________________________________
consensus             TCCAGCTTCTGCTAGATCGAGATATTCTAGATTTAGTAGAGATCCTAGGAAGCCTGGGAT
 
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JMSF048D01+           GGGAATTCCTTCAAAATCATTTCCGCTAAGATCCAGGTGACTTAGTTGTTTCAATTCCAG
JMSF018O06+           GGGAGTTCCTTCAAAATCATTTCCGCTAAGGTCCAGGTGACTTAGTTGTTTCAATTCCAG
JMSF029C12+           GGGAGTTCCTTCAAAATCATTTCCGCTAAGGTCCAGGTGACTTAGTTGTTTCAATTCCAG
                      ____________________________________________________________
consensus             GGGAGTTCCTTCAAAATCATTTCCGCTAAGGTCCAGGTGACTTAGTTGTTTCAATTCCAG
 
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JMSF048D01+           CAAACAGGGACTTAGTTCACCCCCAAAAGCTGAGCTCCCATTGCCT------GGATTGGC
JMSF018O06+           CAAACAGGAACTTAGTTCACCGCCAAAAGCTGAACTGCCATTGCCTGGAGCGGGATTGGC
JMSF029C12+           CAAACAGGAACTTAGTTCACCGCCAAAAGCTGAACTGCCATTGCCTGGAGCGGGATTGGC
                      ____________________________________________________________
consensus             CAAACAGGAACTTAGTTCACCGCCAAAAGCTGAACTGCCATTGCCTGGAGCGGGATTGGC
 
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JMSF048D01+           GAGGTGGAGCTCAGTGACATGGCCACTTACGTTGTTGCACACAACTCCAGCCCATTTAGT
JMSF018O06+           GAGGTGGAGCTCAGTGACATGGCCAGTTACGTTGTTGCACACAACTCCATCCCATTTACT
JMSF029C12+           GAGGTGGAGCTCAGTGACATGGCCAGTTACGTTGTTGCACACAACTCCATCCCATTTACT
                      ____________________________________________________________
consensus             GAGGTGGAGCTCAGTGACATGGCCAGTTACGTTGTTGCACACAACTCCATCCCATTTACT
 
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JMSF048D01+           ACAACAATCATCGTAGTCTCCATCCATATCAACCCAAGACCGAAGCCGACTGGATGGATC
JMSF018O06+           ACAACAAT---CGTAGTCTCCATCAATATCAACCCAAGACCAAAGCCGACTGGATGGATC
JMSF029C12+           ACAACAAT---CGTAGTCTCCATCAATATCAACCCAAGACCAAAGCCGACTGGATGGATC
                      ____________________________________________________________
consensus             ACAACAAT---CGTAGTCTCCATCAATATCAACCCAAGACCAAAGCCGACTGGATGGATC
 
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JMSF048D01+           CTTTAAACCCTTCTTGAAGCACAGCAAGGCCTGCTTTTCATCTTTTCTGCAAATCGGGTT
JMSF018O06+           CTTTAACCCCTTCTTGAAGCACAGCAAGGCCTGCTTTTCATCTTTTCTGCAAATCGGGGT
JMSF029C12+           CTTTAACCCCTTCTTGAAGCACAGCAAGGCCTGCTTTTCATCTTTTCTGCAAATCGGGGT
                      ____________________________________________________________
consensus             CTTTAACCCCTTCTTGAAGCACAGCAAGGCCTGCTTTTCATCTTTTCTGCAAATCGGGGT
 
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JMSF048D01+           TGGGTTTCCGCTAC                                              
JMSF018O06+           TGGGTTTCCGCTACAAAAACCCAAACTCAGTTACCATAAAAACAAAGATGAAGAAGGGAA
JMSF029C12+           TGGGTTTCCGCTAC-AAAACCCAAACTCAGTTACCATAAAAACAAAGATGAAGAAGGGAA
                      ____________________________________________________________
consensus             TGGGTTTCCGCTACAAAAACCCAAACTCAGTTACCATAAAAACAAAGATGAAGAAGGGAA
 
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JMSF018O06+           CAGGATTTATTATAGGCAGCCTGCAGCCACTCATGATGAAGCTAATAAGGGAGATTACTA
JMSF029C12+           CAGGATTTATTATAGGCAGCCTGCAGCCACTCATGATGAAGCTAATAAGGGAGATTACTA
                      ____________________________________________________________
consensus             CAGGATTTATTATAGGCAGCCTGCAGCCACTCATGATGAAGCTAATAAGGGAGATTACTA
 
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JMSF018O06+           TTATTATATTATTTCTTATGGCCTGTTTTGAAATATAGTTTTGCGTGGATGCAATGCT  
JMSF029C12+           TTATTATATTATTTCTTATGGCCTGTTTTGAAATATAGTTTTGCGTGGATGCAATGCTTC
                      ____________________________________________________________
consensus             TTATTATATTATTTCTTATGGCCTGTTTTGAAATATAGTTTTGCGTGGATGCAATGCTTC