Contig 005136:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS065D09Sequence626005136 (6)ref|NP_001234234.1|5e-50chloroplast threonine deaminase 1 precursor [Solanum lycopersicum] gb|ABK20067.1
JMFS084A05Sequence625005136 (6)ref|NP_001234234.1|5e-50chloroplast threonine deaminase 1 precursor [Solanum lycopersicum] gb|ABK20067.1
JMSF015K24Sequence153005136 (6)658005710 (3)ref|XP_009774928.1|2e-46PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest
JMSF020I12Sequence669005136 (6)ref|XP_006339100.1|4e-56PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube717005710 (3)ref|XP_009774928.1|1e-71PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest
JMSF028O05Sequence656005136 (6)ref|XP_006339100.1|2e-53PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube719005710 (3)ref|XP_009774928.1|7e-74PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest
JMSF037K04Sequence671005136 (6)ref|XP_006339100.1|3e-56PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube729019388ref|XP_009774928.1|6e-69PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest

Alignment

This contig is upended


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JMSF020I12+                                                              CAGGTGTAG
JMSF037K04+                                                            CTCAGGTGTAG
                      ____________________________________________________________
consensus                                                              CTCAGGTGTAG
 
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JMSF020I12+           TAACAGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMSF037K04+           TAACAGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMFS065D09+                             CAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMFS084A05+                              AGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
JMSF028O05+               AGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
                      ____________________________________________________________
consensus             TAACAGGCATTACAATCACAGCATCACACCCAAGTTTCTGTGCAGATAAAGCAACCCCTT
 
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JMSF020I12+           GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMSF037K04+           GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMFS065D09+           GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMFS084A05+           GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
JMSF028O05+           GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
                      ____________________________________________________________
consensus             GGGCATGATTACCAGCAGATGCACAGATAACTCCTTTATCCAATTCCTCCTTTGTGAGCT
 
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JMSF020I12+           TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMSF037K04+           TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMFS065D09+           TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMFS084A05+           TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
JMSF028O05+           TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
                      ____________________________________________________________
consensus             TAGCCATCATATTATAAGCTCCTCGAATTTTGAATGAGAAGATAGGTTGAAGATCCTCCC
 
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JMSF020I12+           TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMSF037K04+           TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMFS065D09+           TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMFS084A05+           TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
JMSF028O05+           TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
                      ____________________________________________________________
consensus             TTTTGAACCAGATATTGTTCCCCAGCCTCTCCGTGAGCTTCGAGGCGAGCTGCAATGGCG
 
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JMSF020I12+           ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMSF037K04+           ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMFS065D09+           ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMFS084A05+           ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
JMSF028O05+           ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
                      ____________________________________________________________
consensus             ACCGAAGGGCTACATCGTATACCTTAGTGGACAATATCGCGGTCAAATAGTCTACAGCTT
 
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JMSF020I12+           CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMSF037K04+           CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMFS065D09+           CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMFS084A05+           CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
JMSF028O05+           CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
                      ____________________________________________________________
consensus             CGTAGGTAAATGAATCATTTCCTGGGATGTAACCGGGATTCTCAACAAGGCGTCCAGGCT
 
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JMSF020I12+           CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMSF037K04+           CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMFS065D09+           CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMFS084A05+           CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
JMSF028O05+           CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
                      ____________________________________________________________
consensus             CACTGGTCAAGGAGTCCCAAGACACTACCGGCAAGTCATCAGACCGCAACTGCTTCTTGG
 
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JMSF020I12+           CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMSF037K04+           CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMFS065D09+           CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMFS084A05+           CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
JMSF028O05+           CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
                      ____________________________________________________________
consensus             CGGCTGTGGGTGTGGTGGACAAAACCGGCGCCTCCGGCCTCGAGACCGCAGCGCGAATTA
 
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JMSF020I12+           AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMSF037K04+           AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMFS065D09+           AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMFS084A05+           AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMSF015K24+                                      CATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
JMSF028O05+           AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
                      ____________________________________________________________
consensus             AGAAAGCTCCGCTACTCGCTCTCCTTACATCGCCGGCCTTGACGGTGTAATTGGGAGCAA
 
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JMSF020I12+           TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMSF037K04+           TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMFS065D09+           TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMFS084A05+           TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMSF015K24+           TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
JMSF028O05+           TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
                      ____________________________________________________________
consensus             TGGCAGCGGCCGGCGGCAGGGGTTTGCAAAGGAGATAGGGAGATTGTGTAGTGGCGAAAC
 
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JMSF020I12+           GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGT  
JMSF037K04+           GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGT  
JMFS065D09+           GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGA                
JMFS084A05+           GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGA                
JMSF015K24+           GGAGAACGTCCATGGCGGAATGGNTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGT  
JMSF028O05+           GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGTTC
                      ____________________________________________________________
consensus             GGAGAACGTCCATGGCGGAATGGGTTATGGGAGAGTGGGAGTGATCAAGGAAGCAGGTTC