Contig 005135:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028H19Sequence595005135 (3)ref|XP_006657659.1|80.5PREDICTED: uncharacterized protein LOC102720890 [Oryza brachyantha]562005135 (3)ref|XP_006657659.1|80.5PREDICTED: uncharacterized protein LOC102720890 [Oryza brachyantha]
JMSF029H19Sequence131005135 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF028H19+ GGTAGAGAGGAGCGCAGCAAATCTGAAGACCCGAGAGTTGACGGTTAGAGTCGAC
JMSF028H19- GGTAGAGAGGAGCGCAGCAAATCTGAAGACCCGAGAGTTGACGGTTAGAGTCGAC
                      ____________________________________________________________
consensus GGTAGAGAGGAGCGCAGCAAATCTGAAGACCCGAGAGTTGACGGTTAGAGTCGAC
 
. : . : . : . : . : . :
rJMSF028H19+ CTGATAAGAGTTCTAAGATTGACAACGAGATGAACTGGATTCAGCGGAAAATCTATCTAT
JMSF028H19- CTGATAAGAGTTCTAAGATTGACAACGAGATGAACTGGATTCAGCGGAAAATCTATCTAT
                      ____________________________________________________________
consensus CTGATAAGAGTTCTAAGATTGACAACGAGATGAACTGGATTCAGCGGAAAATCTATCTAT
 
. : . : . : . : . : . :
rJMSF028H19+ ACAATGTTACTTTTGGTCTCTACATGCTCGATTGGTGGGAGCGATGTCTCTTCAATATTC
JMSF028H19- ACAATGTTACTTTTGGTCTCTACATGCTCGATTGGTGGGAGCGATGTCTCTTCAATATTC
                      ____________________________________________________________
consensus ACAATGTTACTTTTGGTCTCTACATGCTCGATTGGTGGGAGCGATGTCTCTTCAATATTC
 
. : . : . : . : . : . :
rJMSF028H19+ TGGTGGTTGTGCTGTTGTGGTTTGTTTGTACAAGGTGTTTCGATCTGCTTCAGAGTTCTC
rJMSF029H19+ TTCTC
JMSF028H19- TGGTGGTTGTGCTGTTGTGGTTTGTTTGTACAAGGTGTTTCGATCTGCTTCAGAGTTCTC
                      ____________________________________________________________
consensus TGGTGGTTGTGCTGTTGTGGTTTGTTTGTACAAGGTGTTTCGATCTGCTTCAGAGTTCTC
 
. : . : . : . : . : . :
rJMSF028H19+ TGGAAGGATATATGGCGATGAGATCATAAAACTATGCTTCTTGAAAAAGGATCACGTCAT
rJMSF029H19+ NGGAAGGATATATGNCGATGAGATCATAAACCTATGCTTCNTGAANAAGGANCACGTCAT
JMSF028H19- TGGAAGGATATATGGCGATGAGATCATAAAACTATGCTTCTTGAAAAAGGATCACGTCAT
                      ____________________________________________________________
consensus TGGAAGGATATATGGCGATGAGATCATAAAACTATGCTTCTTGAAAAAGGATCACGTCAT
 
. : . : . : . : . : . :
rJMSF028H19+ TATGCAAAGATGCCATAATGCATATATCGTGAAAGCTCATCATGAACCCAAGAACAGAAG
rJMSF029H19+ TANGCAAAGATGCCATAATGCATATATCGTGAAAGCTCATCATGAACCCAAGACCAGAAG
JMSF028H19- TATGCAAAGATGCCATAATGCATATATCGTGAAAGCTCATCATGAACCCAAGAACAGAAG
                      ____________________________________________________________
consensus TATGCAAAGATGCCATAATGCATATATCGTGAAAGCTCATCATGAACCCAAGAACAGAAG
 
. : . : . : . : . : . :
rJMSF028H19+ CTCCAGTCTTCATTGTAACTAGAAAACATATATGCCTGACTTGTAAGCTGATGGTTTTTT
rJMSF029H19+ CTCCAG
JMSF028H19- CTCCAGTCTTCATTGTAACTAGAAAACATATATGCCTGACTTGTAAGCTGATGGTTTTTT
                      ____________________________________________________________
consensus CTCCAGTCTTCATTGTAACTAGAAAACATATATGCCTGACTTGTAAGCTGATGGTTTTTT
 
. : . : . : . : . : . :
rJMSF028H19+ TCTTCTTCTTCCTCTTTTATCTTTCTTCTACAAGCTAGAACAGTATTTGGAAACCTTTTT
JMSF028H19- TCTTCTTCTTCCTCTTTTATCTTTCTTCTACAAGCTAGAACAGTATTTGGAAACCTTTTT
                      ____________________________________________________________
consensus TCTTCTTCTTCCTCTTTTATCTTTCTTCTACAAGCTAGAACAGTATTTGGAAACCTTTTT
 
. : . : . : . : . : . :
rJMSF028H19+ GAGTGATTATTTGTTCTGATCATACAGCTTCATAACAGTTCATAATGCTGGCAAACCAGA
JMSF028H19- GAGTGATTATTTGTTCTGATCATACAGCTTCATAACAGTTCATAATGCTGGCAAACCAGA
                      ____________________________________________________________
consensus GAGTGATTATTTGTTCTGATCATACAGCTTCATAACAGTTCATAATGCTGGCAAACCAGA
 
. : . : . : . : . : . :
rJMSF028H19+ TTAGAATATTTCTTCTAATGT
JMSF028H19- TTAGAATATTTCTTCTAATGTTGGATTTGTTTGCTATGGGCAAATAGAAATTTGGAAGAC
                      ____________________________________________________________
consensus TTAGAATATTTCTTCTAATGTTGGATTTGTTTGCTATGGGCAAATAGAAATTTGGAAGAC