Contig 005124:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007D10Sequence261006517 (8)407005124 (3)emb|CDP07401.1|2e-08unnamed protein product [Coffea canephora]
JMSF013K04Sequence501016728emb|CAN77483.1|2e-33hypothetical protein VITISV_040059 [Vitis vinifera]417005124 (3)gb|EPS62900.1|6e-09hypothetical protein M569_11886, partial [Genlisea aurea]
JMSF027J04Sequence296005124 (3)384012583 (2)

Alignment

This contig is upended


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rJMSF007D10+                                                         GNAAAAAAAAAAA
                      ____________________________________________________________
consensus                                                            GNAAAAAAAAAAA
 
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rJMSF007D10+          AAAAAAGTTCTAACCCTCTCAGCTCCACAAAGTTGATGAATTTGGGGTCTCTATTCACGA
rJMSF013K04+                           CTCAGCTCCACAAAGTTGGTGAATTTGGGGTCTCTATTCATGA
                      ____________________________________________________________
consensus             AAAAAAGTTCTAACCCTCTCAGCTCCACAAAGTTGGTGAATTTGGGGTCTCTATTCATGA
 
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rJMSF007D10+          CCAACCGCTGAACCTCCAGAACCAGATNGAATGTTAAAACTCAGCGTTAATGACACAAAT
rJMSF013K04+          CCAACCGATGAACCTCCAGAACCAGATCAAATGTTAAAACTCAGCATTAATGACACAAAT
                      ____________________________________________________________
consensus             CCAACCGCTGAACCTCCAGAACCAGATCGAATGTTAAAACTCAGCGTTAATGACACAAAT
 
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rJMSF007D10+          GTATCGAGATATCATAGCAAGAACATGTTTTCGACTTTGTGCTTCTCGGATTCCTCAAGG
rJMSF013K04+          GTATCGAGATATCATAGAAAGAACATGTTTTCGACTTTGTGCTTCTNGGATTCCTCGAGG
                      ____________________________________________________________
consensus             GTATCGAGATATCATAGCAAGAACATGTTTTCGACTTTGTGCTTCTCGGATTCCTCGAGG
 
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rJMSF007D10+          GGGGTGTAATACTTGGCCAAACGAGTCTTATCCTTGCCAGTTTTTAAGCAGAATGAATCA
rJMSF013K04+          GGGGTGTAATACTTGGCCAAACGAGTC-TATCCTTGCCAGTTTTTAAGCAGAATGAATCA
JMSF027J04-               TGTAATACTTGGCCAAACGAGTC-TATCCTTGCCAGTTTTTAAGCAGAATGAATCA
                      ____________________________________________________________
consensus             GGGGTGTAATACTTGGCCAAACGAGTC-TATCCTTGCCAGTTTTTAAGCAGAATGAATCA
 
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rJMSF007D10+          AATCTGCCCATTTCAAGCCCAAACCAAACCATCAACCAATTCGCCAGAAAAATGAATCGA
rJMSF013K04+          AATCTGCCCATTTCAAGCCCAAACCAAACCATCAACCAATTCGCCAGAGAANTGAATCGA
JMSF027J04-           AATCTGCCCATTTCAAGCCCAAACCAAACCATCAACCAATTCGCCAGAGAAATGAATCGA
                      ____________________________________________________________
consensus             AATCTGCCCATTTCAAGCCCAAACCAAACCATCAACCAATTCGCCAGAGAAATGAATCGA
 
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rJMSF007D10+          GAGAACACCCAAATGGCAATGCTTGAAATTACCATTTTGATAGAACCACCTGGATCCAAG
rJMSF013K04+          GAGAACACCCAAATGGCAATGCTTGAAATTACCATTTTGATAGAACCAACTGGATCCAAG
JMSF027J04-           GAGAACACCCAAATGGCAATGCTTGAAATTACCATTTTGATAGAACC-ACTGGATCCAAG
                      ____________________________________________________________
consensus             GAGAACACCCAAATGGCAATGCTTGAAATTACCATTTTGATAGAACCAACTGGATCCAAG
 
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rJMSF007D10+          AGACAAGATCTGGGTTGATTCAGTCTGGCATTTA                          
rJMSF013K04+          AGACAAGA-CTGGGNTGATTCAGTCTGGCATTTA                          
JMSF027J04-           AGACAAGA-CTGGGTTGATTCAGTCTGGCATTTAGCGAAAAAGAGAAGCTTTTCTGTTTT
                      ____________________________________________________________
consensus             AGACAAGA-CTGGGTTGATTCAGTCTGGCATTTAGCGAAAAAGAGAAGCTTTTCTGTTTT
 
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JMSF027J04-           GCCCGCCGTCTGGAACAGTATATTATTTTGAAGTATTTCCTTTCTTCTTTAAAAAAAAAA
                      ____________________________________________________________
consensus             GCCCGCCGTCTGGAACAGTATATTATTTTGAAGTATTTCCTTTCTTCTTTAAAAAAAAAA