Contig 005121:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027E14Sequence656005121 (2)ref|NP_001234220.1|9e-109auxin efflux facilitator SlPIN9 [Solanum lycopersicum] dbj|BAJ09454.1| auxin eff704011388 (3)gb|AIF28293.1|1e-88PIN-like protein, partial [Persea borbonia]
JMSF039N22Sequence663005121 (2)ref|NP_001234220.1|2e-112auxin efflux facilitator SlPIN9 [Solanum lycopersicum] dbj|BAJ09454.1| auxin eff778011388 (3)gb|AIF28293.1|3e-90PIN-like protein, partial [Persea borbonia]

Alignment

This contig is upended


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JMSF039N22+                                                         AAGACATGAATTCC
                      ____________________________________________________________
consensus                                                           AAGACATGAATTCC
 
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JMSF039N22+           ACCTTCAGACACCGGAGAACCACCGGAGCTCCAGACGAACATGTGATGATCTTTGCCAGC
JMSF027E14+               TCAGACACCGGAGAACCACCGGAGCTCCAGACGAACATGTGATGATCTTTGCCAGC
                      ____________________________________________________________
consensus             ACCTTCAGACACCGGAGAACCACCGGAGCTCCAGACGAACATGTGATGATCTTTGCCAGC
 
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JMSF039N22+           ACTATCGGTCCCATTGGCCTTCTTCTTGGCCGCCGGCGCAGTCATCGGAGAGAATATTCC
JMSF027E14+           ACTATCGGTCCCATTGGCCTTCTTCTTGGCCGCCGGCGCAGTCATCGGAGAGAATATTCC
                      ____________________________________________________________
consensus             ACTATCGGTCCCATTGGCCTTCTTCTTGGCCGCCGGCGCAGTCATCGGAGAGAATATTCC
 
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JMSF039N22+           GGCACTGGCCGGAGCAGGATAGCCAGCATAACCCCTTCCAAAACCAATCTCCTCATCGAA
JMSF027E14+           GGCACTGGCCGGAGCAGGATAGCCAGCATAACCCCTTCCAAAACCAATCTCCTCATCGAA
                      ____________________________________________________________
consensus             GGCACTGGCCGGAGCAGGATAGCCAGCATAACCCCTTCCAAAACCAATCTCCTCATCGAA
 
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JMSF039N22+           CCCAGAATTGGACCGCCTTGGGCTCAGATTTGCGTTCTTCCCGTTCACCAGGGAGTAAAA
JMSF027E14+           CCCAGAATTGGACCGCCTTGGGCTCAGATTTGCGTTCTTCCCGTTCACCAGGGAGTAAAA
                      ____________________________________________________________
consensus             CCCAGAATTGGACCGCCTTGGGCTCAGATTTGCGTTCTTCCCGTTCACCAGGGAGTAAAA
 
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JMSF039N22+           ATCTGTGTGGTTAAAGCTTGAGCCTCTGGGAGTTGGGTTCCTTGAAGACTGCAGAGAGTA
JMSF027E14+           ATCTGTGTGGTTAAAGCTTGAGCCTCTGGGAGTTGGGTTCCTTGAAGACTGCAGAGAGTA
                      ____________________________________________________________
consensus             ATCTGTGTGGTTAAAGCTTGAGCCTCTGGGAGTTGGGTTCCTTGAAGACTGCAGAGAGTA
 
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JMSF039N22+           AATCTCTGCATTAGAGAGATTTGAAGCTCTGGGTGTGAAGGAAAGCCCAGAGTTTGGGCC
JMSF027E14+           AATCTCTGCATTAGAGAGATTTGAAGCTCTGGGTGTGAAGGAAAGCCCAGAGTTTGGGCC
                      ____________________________________________________________
consensus             AATCTCTGCATTAGAGAGATTTGAAGCTCTGGGTGTGAAGGAAAGCCCAGAGTTTGGGCC
 
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JMSF039N22+           GTGCCTGGAGAAAATTTCAGATCTTGAGCTGGTTGATTTTCTCACAGTCACATGAAGCCT
JMSF027E14+           GTGCCTGGAGAAAATTTCAGATCTTGAGCTGGTTGATTTTCTCACAGTCACATGAAGCCT
                      ____________________________________________________________
consensus             GTGCCTGGAGAAAATTTCAGATCTTGAGCTGGTTGATTTTCTCACAGTCACATGAAGCCT
 
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JMSF039N22+           TCCATCCTCTCCAACCTCAGCTTGAGTCTCCAATGGCTCCTTCCCATCCAAGGAGATAAT
JMSF027E14+           TCCATCCTCTCCAACCTCAGCTTGAGTCTCCAATGGCTCCTTCCCATCCAAGGAGATAAT
                      ____________________________________________________________
consensus             TCCATCCTCTCCAACCTCAGCTTGAGTCTCCAATGGCTCCTTCCCATCCAAGGAGATAAT
 
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JMSF039N22+           ATCAGAGTCAACTTTGAAGGAGATAATGGAGCCGGCATTGTCAGGGAACTGCTCCGCAAT
JMSF027E14+           ATCAGAGTCAACTTTGAAGGAGATAATGGAGCCGGCATTGTCAGGGAACTGCTCCGCAAT
                      ____________________________________________________________
consensus             ATCAGAGTCAACTTTGAAGGAGATAATGGAGCCGGCATTGTCAGGGAACTGCTCCGCAAT
 
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JMSF039N22+           CAGCAATCTGGCACCTCTGAACTCAAACAAGAAGAGCAGCAAAGTGTACCAGATAATACA
JMSF027E14+           CAGCAATCTGGCACCTNTGAACTCAAACAAGAAGAGCAGCAAAGTGTACCAGATAATACA
                      ____________________________________________________________
consensus             CAGCAATCTGGCACCTCTGAACTCAAACAAGAAGAGCAGCAAAGTGTACCAGATAATACA
 
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JMSF039N22+           CTGAAGCACCACAATCTGAACCATGAGAGTCCCAGAGGCATCCCCATAC           
JMSF027E14+           CTGAAGCACCACAATCTGAACCATGAGAGTCCCAGAGGCATCCCCATACATGCCCTTCCA
                      ____________________________________________________________
consensus             CTGAAGCACCACAATCTGAACCATGAGAGTCCCAGAGGCATCCCCATACATGCCCTTCCA