Contig 005118:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001I19Sequence556005118 (12)691005578 (11)gb|AAF14242.1|AF110226_15e-35nuclear RNA binding protein [Nicotiana tabacum]
JMFF003B02Sequence500005118 (12)759005578 (11)emb|CDP08361.1|9e-38unnamed protein product [Coffea canephora]
JMFF025E03Sequence525005118 (12)731005578 (11)gb|AAF14242.1|AF110226_11e-35nuclear RNA binding protein [Nicotiana tabacum]
JMFF035I16Sequence559005118 (12)762005578 (11)emb|CDP08361.1|2e-39unnamed protein product [Coffea canephora]
JMFF047D08Sequence590005118 (12)570005578 (11)gb|AAF14242.1|AF110226_12e-15nuclear RNA binding protein [Nicotiana tabacum]
JMFF047P11Sequence590005118 (12)601005578 (11)emb|CDP08361.1|6e-25unnamed protein product [Coffea canephora]
JMFF051M03Sequence558005118 (12)619005578 (11)emb|CDP08361.1|4e-28unnamed protein product [Coffea canephora]
JMFS168E01Sequence577005118 (12)
JMSF027C19Sequence746005118 (12)770005578 (11)emb|CDP08361.1|1e-32unnamed protein product [Coffea canephora]
JMSF039H17Sequence559005118 (12)921008447 (4)ref|XP_009604104.1|5e-88PREDICTED: nuclear cap-binding protein subunit 2-like [Nicotiana tomentosiformi
JMSF046C11Sequence750005118 (12)767005578 (11)emb|CDP08361.1|2e-53unnamed protein product [Coffea canephora]
JMSF047H17Sequence702005118 (12)784005578 (11)emb|CDP08361.1|9e-45unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047H17+ CC
                      ____________________________________________________________
consensus CC
 
. : . : . : . : . : . :
JMSF047H17+ ACCACGGCGATCGCCACGGAAGCCACCCCTAGATCCACCATAGCNTCNTCTCCTTTCAAA
JMSF046C11+ TCCACCATAGCCTCCTCTCCTTTCAAA
                      ____________________________________________________________
consensus ACCACGGCGATCGCCACGGAAGCCACCCCTAGATCCACCATAGCCTCCTCTCCTTTCAAA
 
. : . : . : . : . : . :
JMSF047H17+ GGTCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCCTCTCCT
JMSF046C11+ GGTCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCCTCTCCT
                      ____________________________________________________________
consensus GGTCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCCTCTCCT
 
. : . : . : . : . : . :
JMSF047H17+ TTCAAATGGCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCC
JMSF046C11+ TTCAAATGGCTTTCCACCTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCC
JMSF027C19+ CATCTTCAGATTGTCTATAACNTCCACCATAGCCTCC
                      ____________________________________________________________
consensus TTCAAATGGCTTTCCACCTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCC
 
. : . : . : . : . : . :
JMSF047H17+ TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
JMFS168E01+ TCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
JMSF046C11+ TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
JMSF027C19+ TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
                      ____________________________________________________________
consensus TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
 
. : . : . : . : . : . :
JMSF047H17+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFS168E01+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMSF046C11+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFF047P11+ CCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFF035I16+ TCTGATGGTCTATAACCACC
JMFF051M03+ CAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMSF039H17+ TTCTGATGGTCTATAACCACC
JMFF047D08+ CCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFF001I19+ TTCTGATGGTCTATAACCACC
JMSF027C19+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
                      ____________________________________________________________
consensus GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
 
. : . : . : . : . : . :
JMSF047H17+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFS168E01+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMSF046C11+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF047P11+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF035I16+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF051M03+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMSF039H17+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF025E03+ TGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF047D08+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF001I19+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF003B02+ AGTAGAATCTTGATTGAACCC
JMSF027C19+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
                      ____________________________________________________________
consensus AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
 
. : . : . : . : . : . :
JMSF047H17+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFS168E01+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMSF046C11+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF047P11+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF035I16+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF051M03+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMSF039H17+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF025E03+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF047D08+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF001I19+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF003B02+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMSF027C19+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
                      ____________________________________________________________
consensus ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
 
. : . : . : . : . : . :
JMSF047H17+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFS168E01+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMSF046C11+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF047P11+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF035I16+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF051M03+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMSF039H17+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF025E03+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF047D08+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF001I19+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF003B02+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMSF027C19+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
                      ____________________________________________________________
consensus AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
 
. : . : . : . : . : . :
JMSF047H17+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFS168E01+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMSF046C11+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF047P11+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF035I16+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF051M03+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMSF039H17+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF025E03+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF047D08+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF001I19+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF003B02+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMSF027C19+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
                      ____________________________________________________________
consensus GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
 
. : . : . : . : . : . :
JMSF047H17+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFS168E01+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMSF046C11+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF047P11+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF035I16+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF051M03+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMSF039H17+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF025E03+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF047D08+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF001I19+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF003B02+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMSF027C19+ AGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
                      ____________________________________________________________
consensus CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
 
. : . : . : . : . : . :
JMSF047H17+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFS168E01+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMSF046C11+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF047P11+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF035I16+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF051M03+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMSF039H17+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF025E03+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF047D08+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF001I19+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF003B02+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMSF027C19+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
                      ____________________________________________________________
consensus GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
 
. : . : . : . : . : . :
JMSF047H17+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATT
JMFS168E01+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMSF046C11+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF047P11+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF035I16+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF051M03+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMSF039H17+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF025E03+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF047D08+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF001I19+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF003B02+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMSF027C19+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
                      ____________________________________________________________
consensus ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
 
. : . : . : . : . : . :
JMFS168E01+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGG
JMSF046C11+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF047P11+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF035I16+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF051M03+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMSF039H17+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF025E03+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF047D08+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF001I19+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF003B02+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMSF027C19+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
                      ____________________________________________________________
consensus TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
 
. : . : . : . : . : . :
JMSF046C11+ CT
JMFF047P11+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF035I16+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF051M03+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTAT
JMSF039H17+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCT
JMFF025E03+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF047D08+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF001I19+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCT
JMFF003B02+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMSF027C19+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTCC
                      ____________________________________________________________
consensus CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTCC