| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001I19 | Sequence | 556 | 005118 (12) | 691 | 005578 (11) | gb|AAF14242.1|AF110226_1 | 5e-35 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMFF003B02 | Sequence | 500 | 005118 (12) | 759 | 005578 (11) | emb|CDP08361.1| | 9e-38 | unnamed protein product [Coffea canephora] | |||
| JMFF025E03 | Sequence | 525 | 005118 (12) | 731 | 005578 (11) | gb|AAF14242.1|AF110226_1 | 1e-35 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMFF035I16 | Sequence | 559 | 005118 (12) | 762 | 005578 (11) | emb|CDP08361.1| | 2e-39 | unnamed protein product [Coffea canephora] | |||
| JMFF047D08 | Sequence | 590 | 005118 (12) | 570 | 005578 (11) | gb|AAF14242.1|AF110226_1 | 2e-15 | nuclear RNA binding protein [Nicotiana tabacum] | |||
| JMFF047P11 | Sequence | 590 | 005118 (12) | 601 | 005578 (11) | emb|CDP08361.1| | 6e-25 | unnamed protein product [Coffea canephora] | |||
| JMFF051M03 | Sequence | 558 | 005118 (12) | 619 | 005578 (11) | emb|CDP08361.1| | 4e-28 | unnamed protein product [Coffea canephora] | |||
| JMFS168E01 | Sequence | 577 | 005118 (12) | ||||||||
| JMSF027C19 | Sequence | 746 | 005118 (12) | 770 | 005578 (11) | emb|CDP08361.1| | 1e-32 | unnamed protein product [Coffea canephora] | |||
| JMSF039H17 | Sequence | 559 | 005118 (12) | 921 | 008447 (4) | ref|XP_009604104.1| | 5e-88 | PREDICTED: nuclear cap-binding protein subunit 2-like [Nicotiana tomentosiformi | |||
| JMSF046C11 | Sequence | 750 | 005118 (12) | 767 | 005578 (11) | emb|CDP08361.1| | 2e-53 | unnamed protein product [Coffea canephora] | |||
| JMSF047H17 | Sequence | 702 | 005118 (12) | 784 | 005578 (11) | emb|CDP08361.1| | 9e-45 | unnamed protein product [Coffea canephora] | |||
This contig is upended
. : . : . : . : . : . :
JMSF047H17+ CC
____________________________________________________________
consensus CC
. : . : . : . : . : . :
JMSF047H17+ ACCACGGCGATCGCCACGGAAGCCACCCCTAGATCCACCATAGCNTCNTCTCCTTTCAAA
JMSF046C11+ TCCACCATAGCCTCCTCTCCTTTCAAA
____________________________________________________________
consensus ACCACGGCGATCGCCACGGAAGCCACCCCTAGATCCACCATAGCCTCCTCTCCTTTCAAA
. : . : . : . : . : . :
JMSF047H17+ GGTCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCCTCTCCT
JMSF046C11+ GGTCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCCTCTCCT
____________________________________________________________
consensus GGTCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCCTCTCCT
. : . : . : . : . : . :
JMSF047H17+ TTCAAATGGCTTTCCACNTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCC
JMSF046C11+ TTCAAATGGCTTTCCACCTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCC
JMSF027C19+ CATCTTCAGATTGTCTATAACNTCCACCATAGCCTCC
____________________________________________________________
consensus TTCAAATGGCTTTCCACCTTCTCCATCTTCAGATTGTCTATAACCTCCACCATAGCCTCC
. : . : . : . : . : . :
JMSF047H17+ TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
JMFS168E01+ TCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
JMSF046C11+ TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
JMSF027C19+ TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
____________________________________________________________
consensus TCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCGGATTGTCTATAACCTCCACCATA
. : . : . : . : . : . :
JMSF047H17+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFS168E01+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMSF046C11+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFF047P11+ CCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFF035I16+ TCTGATGGTCTATAACCACC
JMFF051M03+ CAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMSF039H17+ TTCTGATGGTCTATAACCACC
JMFF047D08+ CCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
JMFF001I19+ TTCTGATGGTCTATAACCACC
JMSF027C19+ GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
____________________________________________________________
consensus GCCTCCTCTCCTTTCAAATGGCTTTCCACCTTCTCCATCTTCTGATGGTCTATAACCACC
. : . : . : . : . : . :
JMSF047H17+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFS168E01+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMSF046C11+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF047P11+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF035I16+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF051M03+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMSF039H17+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF025E03+ TGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF047D08+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF001I19+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
JMFF003B02+ AGTAGAATCTTGATTGAACCC
JMSF027C19+ AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
____________________________________________________________
consensus AGCAAAACCATTGTTGTTGCCATAATTATTCTCATTGTTAGTAGAATCTTGATTGAACCC
. : . : . : . : . : . :
JMSF047H17+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFS168E01+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMSF046C11+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF047P11+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF035I16+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF051M03+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMSF039H17+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF025E03+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF047D08+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF001I19+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMFF003B02+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
JMSF027C19+ ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
____________________________________________________________
consensus ACGTCCCCGACCACCACGTCCACCTCCACGTTGACCACGTCCAGCTCCCCGCTGAGGTTC
. : . : . : . : . : . :
JMSF047H17+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFS168E01+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMSF046C11+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF047P11+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF035I16+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF051M03+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMSF039H17+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF025E03+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF047D08+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF001I19+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMFF003B02+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
JMSF027C19+ AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
____________________________________________________________
consensus AGTTTTGGCTTCCCTCACAGCTTGGGAAGGAGGAAGAGGCTTGGAAGGCAACTTGGCAGT
. : . : . : . : . : . :
JMSF047H17+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFS168E01+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMSF046C11+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF047P11+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF035I16+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF051M03+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMSF039H17+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF025E03+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF047D08+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF001I19+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMFF003B02+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
JMSF027C19+ GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
____________________________________________________________
consensus GGCGGCGGCGGCGGCGGCGTTAGGCTTCGCCGGAGCCTGACCAGGAGTCTTCTTGGGAGC
. : . : . : . : . : . :
JMSF047H17+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFS168E01+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMSF046C11+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF047P11+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF035I16+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF051M03+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMSF039H17+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF025E03+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF047D08+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF001I19+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMFF003B02+ CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
JMSF027C19+ AGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
____________________________________________________________
consensus CGAGGCTGGAGTAGGCAGCTTCTGCTGCTGAGCAGCAAGGAGCTGCAATGGATCCTCGTT
. : . : . : . : . : . :
JMSF047H17+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFS168E01+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMSF046C11+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF047P11+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF035I16+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF051M03+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMSF039H17+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF025E03+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF047D08+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF001I19+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMFF003B02+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
JMSF027C19+ GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
____________________________________________________________
consensus GTCATCGTCACCCAGAAGGTCAAAAGGGTTCATCGTCGCCATTTCTGAATCCTTTTCAGA
. : . : . : . : . : . :
JMSF047H17+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATT
JMFS168E01+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMSF046C11+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF047P11+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF035I16+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF051M03+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMSF039H17+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF025E03+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF047D08+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF001I19+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMFF003B02+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
JMSF027C19+ ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
____________________________________________________________
consensus ACTGAAATATGTATCACCGCTCGAAGCTTTACCGGAGATTCTCGAGAATCAAGGAAAGGC
. : . : . : . : . : . :
JMFS168E01+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGG
JMSF046C11+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF047P11+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF035I16+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF051M03+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMSF039H17+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF025E03+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF047D08+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF001I19+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMFF003B02+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
JMSF027C19+ TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
____________________________________________________________
consensus TAGTTACAAGAATCCATGGGGAATAAAAACGAGAAATGGCAGAGAGGAACACTGGAAACC
. : . : . : . : . : . :
JMSF046C11+ CT
JMFF047P11+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF035I16+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF051M03+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTAT
JMSF039H17+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCT
JMFF025E03+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF047D08+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMFF001I19+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCT
JMFF003B02+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTC
JMSF027C19+ CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTCC
____________________________________________________________
consensus CTAGCCAAAGCGGCAGAGACTGGGGATTTTATGTGGAGCCTAATCCTAAAACCCTAGTCC