Contig 005117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027C02Sequence686005117 (4)ref|XP_010086907.1|3e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit712005117 (4)ref|XP_010086907.1|4e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit
JMSF038K11Sequence678005117 (4)ref|XP_010086907.1|2e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit668005117 (4)ref|XP_010086907.1|2e-95AP-4 complex subunit sigma [Morus notabilis] gb|EXB24698.1| AP-4 complex subunit

Alignment

This contig is upended


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rJMSF038K11-                                                       AAAGTGAAATTAACT
JMSF038K11+                                          AATACAAAACTCCAAAAGTGAAATTAACT
rJMSF027C02-                                                                 TAACT
                      ____________________________________________________________
consensus                                            AATACAAAACTCCAAAAGTGAAATTAACT
 
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rJMSF038K11-          CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
JMSF038K11+           CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
rJMSF027C02-          CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
                      ____________________________________________________________
consensus             CGTAACTGGCAATGGAGAATGACCAATTTATGTCCTGCAATATCAACACCTATTTTGCCT
 
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rJMSF038K11-          TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
JMSF038K11+           TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
rJMSF027C02-          TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
JMSF027C02+                                             AGCTGAGAGTTANTAAGCCAATGCAA
                      ____________________________________________________________
consensus             TCAAAATGTAATGTAATATAACAAACTCAATAGAAGCTGAGAGTTACTAAGCCAATGCAA
 
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rJMSF038K11-          AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
JMSF038K11+           AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
rJMSF027C02-          AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
JMSF027C02+           AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
                      ____________________________________________________________
consensus             AGTAGACACACAAACAATGATCAAGCTTATGATGCTTTGTCCACTAGCTGTATGGGAGAC
 
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rJMSF038K11-          AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
JMSF038K11+           AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
rJMSF027C02-          AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
JMSF027C02+           AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
                      ____________________________________________________________
consensus             AAAATGTTGGACTTGCTCGTCTCAACAATACACCCGTTCATCACCATCTCCTCCAGCATG
 
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rJMSF038K11-          AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
JMSF038K11+           AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
rJMSF027C02-          AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
JMSF027C02+           AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
                      ____________________________________________________________
consensus             AAGTGCGCTTTCTCCAGATGAAACATGATATCCAACTCGCACACGTTGCCAAAATGACGA
 
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rJMSF038K11-          TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
JMSF038K11+           TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
rJMSF027C02-          TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
JMSF027C02+           TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
                      ____________________________________________________________
consensus             TCCATTGTTTCAACTAGCAGGTGAATGAATTCCAAAATTGCAAGCTCATTTTCTTCATTG
 
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rJMSF038K11-          TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
JMSF038K11+           TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
rJMSF027C02-          TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
JMSF027C02+           TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
                      ____________________________________________________________
consensus             TCAACTCCAACCATGAAAAATAGTGACGCATATCGCCTGTAGACTATTTTGTAGTTACGA
 
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rJMSF038K11-          TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
JMSF038K11+           TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
rJMSF027C02-          TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
JMSF027C02+           TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
                      ____________________________________________________________
consensus             TGCTCCACGAATGAACACTGTTGCTCATTCCGCGCGAGACACTTGCGAACGATTTCGCCC
 
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rJMSF038K11-          TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
JMSF038K11+           TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
rJMSF027C02-          TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
JMSF027C02+           TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
                      ____________________________________________________________
consensus             TCAAGCGCACGCCTTTCTTCGATGGTGAGGTACTCGTAGTACTGGGCTAGCCGAGTCTGC
 
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rJMSF038K11-          CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
JMSF038K11+           CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
rJMSF027C02-          CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
JMSF027C02+           CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
                      ____________________________________________________________
consensus             CCTTGCTTGTTCACCATTAGTATGAATCTGATCCCCATCTCCTTCTTCCTTCCTTTCTCT
 
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rJMSF038K11-          CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCT            
JMSF038K11+           CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCT            
rJMSF027C02-          CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCTATCAAATATTAT
JMSF027C02+           CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCTATCAAATATTAT
                      ____________________________________________________________
consensus             CAACGCGATCTCCCCGATTCACCACCCCTTCACTCGCTCGGTTCGGCTATCAAATATTAT
 
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rJMSF027C02-          ATACTCCGTATATATATATATATGATCGATCGTATACTCGTATCGAG             
JMSF027C02+           ATACTCCGTATATATATATATATGATCGATCGTATACTCGTATCGAGAAGGTCGAAAATC
                      ____________________________________________________________
consensus             ATACTCCGTATATATATATATATGATCGATCGTATACTCGTATCGAGAAGGTCGAAAATC
 
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JMSF027C02+           ACGAGTTTGAACAACGTTGGTAAATTCAATCCTACTTCAGCTGGGAGCTAGACGATTCTC
                      ____________________________________________________________
consensus             ACGAGTTTGAACAACGTTGGTAAATTCAATCCTACTTCAGCTGGGAGCTAGACGATTCTC