Contig 005114:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026M17Sequence639005114 (2)ref|XP_004249033.1|3e-101PREDICTED: mannan endo-1,4-beta-mannosidase 6 isoform X1 [Solanum lycopersicum]656001382 (2)ref|XP_009774303.1|1e-92PREDICTED: mannan endo-1,4-beta-mannosidase 6 isoform X3 [Nicotiana sylvestris]
JMSF034A20Sequence676005114 (2)ref|XP_004249033.1|9e-109PREDICTED: mannan endo-1,4-beta-mannosidase 6 isoform X1 [Solanum lycopersicum]620001382 (2)ref|XP_009774303.1|4e-88PREDICTED: mannan endo-1,4-beta-mannosidase 6 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+                                                       GATCGTCTTTGTAGGT
                      ____________________________________________________________
consensus                                                         GATCGTCTTTGTAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           AATGTTGTTGACAGTGTTTACTCTGTTAAGCACAGCCTTAATATGGGATTTGAAGTATCC
JMSF026M17+                                TCTGTTAAGCACAGCCTTAATATGGGATTTGAAGTATCC
                      ____________________________________________________________
consensus             AATGTTGTTGACAGTGTTTACTCTGTTAAGCACAGCCTTAATATGGGATTTGAAGTATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           TTTGAGAGTGGGATGGGAGAAGAAGTCATCATCAGAAGTCAAATTCAGGCCTGCATCTTT
JMSF026M17+           TTTGAGAGTGGGATGGGAGAAGAAGTCATCATCAGAAGTCAAATTCAGGCCTGCATCTTT
                      ____________________________________________________________
consensus             TTTGAGAGTGGGATGGGAGAAGAAGTCATCATCAGAAGTCAAATTCAGGCCTGCATCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           TCCCCATTTCACATACTGCTTTTTGCCACCATAGGCTTCCCAGTTGTTAGCGAAGGACAG
JMSF026M17+           TCCCCATTTCACATACTGCTTTTTGCCACCATAGGCTTCCCAGTTGTTAGCGAAGGACAG
                      ____________________________________________________________
consensus             TCCCCATTTCACATACTGCTTTTTGCCACCATAGGCTTCCCAGTTGTTAGCGAAGGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           TATAAGCCTGACTTTGTACTTCTTTGCTTCGCTCACGACGAAATCCAACGCCTTGAAGAC
JMSF026M17+           TATAAGCCTGACTTTGTACTTCTTTGCTTCGCTCACGACGAAATCCAACGCCTTGAAGAC
                      ____________________________________________________________
consensus             TATAAGCCTGACTTTGTACTTCTTTGCTTCGCTCACGACGAAATCCAACGCCTTGAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           ATCTTCATCGTAAACTCCAGGCGTTTTCTGGAGAGCCCTCCACTGGCCATCATTGAAAGC
JMSF026M17+           ATCTTCATCGTAAACTCCAGGCGTTTTCTGGAGAGCCCTCCACTGGCCATCATTGAAAGC
                      ____________________________________________________________
consensus             ATCTTCATCGTAAACTCCAGGCGTTTTCTGGAGAGCCCTCCACTGGCCATCATTGAAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           CCAAGTGCGGCACACTGTCATGCCTACAGACGACGCCTGCTTAAACACCTCGGTCACTTT
JMSF026M17+           CCAAGTGCGGCACACTGTCATGCCTACAGACGACGCCTGCTTAAACACCTCGGTCACTTT
                      ____________________________________________________________
consensus             CCAAGTGCGGCACACTGTCATGCCTACAGACGACGCCTGCTTAAACACCTCGGTCACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           CCCCCGGGTCGACTGGTCTGCTGCAAACACCATTAGCCAGTAAGTGTTGAAGCCATTCAC
JMSF026M17+           CCCCCGGGTCGACTGGTCTGCTGCAAACACCATTAGCCAGTAAGTGTTGAAGCCATTCAC
                      ____________________________________________________________
consensus             CCCCCGGGTCGACTGGTCTGCTGCAAACACCATTAGCCAGTAAGTGTTGAAGCCATTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           ATAGAAGGGCTGGCCATTCGCCACAAACTGGTTCCCGCTCTTCTGCACCATCGTCCACTC
JMSF026M17+           ATAGAAGGGCTGGCCATTCGCCACAAACTGGTTCCCGCTCTTCTGCACCATCGTCCACTC
                      ____________________________________________________________
consensus             ATAGAAGGGCTGGCCATTCGCCACAAACTGGTTCCCGCTCTTCTGCACCATCGTCCACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           GTCTTCCATCTCACCCCCGCGGTAACTCCAATCCCGTTCTGCACTATCCCATGCCTCAAA
JMSF026M17+           GTCTTCCATCTCACCCCCGCGGTAACTCCAATCCCGTTCTGCACTATCCCATGCCTCAAA
                      ____________________________________________________________
consensus             GTCTTCCATCTCACCCCCGCGGTAACTCCAATCCCGTTCTGCACTATCCCATGCCTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           ACTATCACTCTTGGTGTCTGTCAATAAATACGAGTTTGACATTGCGATAAGTACTGTAAA
JMSF026M17+           ACTATCACTCTTGGTGTCTGTCAATAAATACGAGTTTGACATTGCGATAAGTACTGTAAA
                      ____________________________________________________________
consensus             ACTATCACTCTTGGTGTCTGTCAATAAATACGAGTTTGACATTGCGATAAGTACTGTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034A20+           CATAACAGCCAGAAGCTGAACTTTGCAACTAAATTTAACTTGATGCTTTGCCATTTCTCC
JMSF026M17+           CATAACAGCCAGAAGCTGAACTTTGCAACTAAATTTAACTTGATGCTTTGCCATTTCTCC
                      ____________________________________________________________
consensus             CATAACAGCCAGAAGCTGAACTTTGCAACTAAATTTAACTTGATGCTTTGCCATTTCTCC