Contig 005109:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008G10Sequence593005109 (3)ref|XP_009609647.1|7e-66PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial
JMSF019C09Sequence258005109 (3)ref|XP_009609647.1|5e-22PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial799018188ref|XP_009785406.1|2e-83PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial
JMSF025M07Sequence677005109 (3)ref|XP_009609647.1|7e-67PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial737022549ref|XP_009611852.1|4e-51PREDICTED: GPI mannosyltransferase 1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS008G10+ CATCAAGAAAT
JMSF025M07+ AGAGCACATCAAGAAAT
                      ____________________________________________________________
consensus AGAGCACATCAAGAAAT
 
. : . : . : . : . : . :
JMFS008G10+ GTATTGAAACAATTCAAATCCTGGGGGCAACCGTGTTTATGCATAGCCAAGAAAACCTTC
JMSF025M07+ GTATTGAAACAATTCAAATCCTGGGGGCAACCGTGTTTATGCATAGCCAAGAAAACCTTC
                      ____________________________________________________________
consensus GTATTGAAACAATTCAAATCCTGGGGGCAACCGTGTTTATGCATAGCCAAGAAAACCTTC
 
. : . : . : . : . : . :
JMFS008G10+ AACGCCTTATCGGATTTGCCAGCAGAAATGTACCTTTCGGTGATGATAGCGAATGTTTTG
JMSF025M07+ AACGCCTTATCGGATTTGCCAGCAGAAATGTACCTTTCGGTGATGATAGCGAATGTTTTG
                      ____________________________________________________________
consensus AACGCCTTATCGGATTTGCCAGCAGAAATGTACCTTTCGGTGATGATAGCGAATGTTTTG
 
. : . : . : . : . : . :
JMFS008G10+ GGGCGAGGGCCGAGCCGTCGGGCCTGCATCCGAGCCACGAGCTTCCAAAGAGTCCTGTAG
JMSF025M07+ GGGCGAGGGCCGAGCCGTCGGGCCTGCATCCGAGCCACGAGCTTCCAAAGAGTCCTGTAG
                      ____________________________________________________________
consensus GGGCGAGGGCCGAGCCGTCGGGCCTGCATCCGAGCCACGAGCTTCCAAAGAGTCCTGTAG
 
. : . : . : . : . : . :
JMFS008G10+ TCGCGCATCCGGGCGGCGATATCTATGGCGTGGTTGAATGCAGCGGCGGAGTGAGCGTAA
JMSF019C09+ GGAGTGAGCNTAA
JMSF025M07+ TCGCGCATCCGGGCGGCGATATCTATGGCGTGGTTGAATGCAGCGGCGGAGTGAGCGTAA
                      ____________________________________________________________
consensus TCGCGCATCCGGGCGGCGATATCTATGGCGTGGTTGAATGCAGCGGCGGAGTGAGCGTAA
 
. : . : . : . : . : . :
JMFS008G10+ GATGGGTGGCGATCGAGGTGGTTGAAGAATTGGAGCGCCTTAGGGCCATGGTTCCAGAGG
JMSF019C09+ GATGGNTGNCGATCGAGGTGGTTGAAGAATTGGAGCGCCTTAGGGCCATGGTTCCAGAGG
JMSF025M07+ GATGGGTGGCGATCGAGGTGGTTGAAGAATTGGAGCGCCTTAGGGCCATGGTTCCAGAGG
                      ____________________________________________________________
consensus GATGGGTGGCGATCGAGGTGGTTGAAGAATTGGAGCGCCTTAGGGCCATGGTTCCAGAGG
 
. : . : . : . : . : . :
JMFS008G10+ CGCTTGAGGACGGCTTGGACGAGGTCTGGGGTCCATTGGGTGAAGTTGTGGAGGGTTGAA
JMSF019C09+ CGCTTGAGGACGGCTTGGACGAGGTCTGGGGTCCATTGGGTGAAGTTGTGGAGGGTTGAA
JMSF025M07+ CGCTTGAGGACGGCTTGGACGAGGTCTGGGGTCCATTGGGTGAAGTTGTGGAGGGTTGAA
                      ____________________________________________________________
consensus CGCTTGAGGACGGCTTGGACGAGGTCTGGGGTCCATTGGGTGAAGTTGTGGAGGGTTGAA
 
. : . : . : . : . : . :
JMFS008G10+ GCTAGGGTCTTTGGGTCTTCCTTGAGGATGCGGTTGGAGAGCGTAACAGCGTCTATTGGT
JMSF019C09+ GCTAGGGTCTTTGGGTCTTCCTTGAGGATGCGGTTGGAGAGCGTAACAGCGTCTATTGGT
JMSF025M07+ GCTAGGGTCTTTGGGTCTTCCTTGAGGATGCGGTTGGAGAGCGTAACAGCGTCTATTGGT
                      ____________________________________________________________
consensus GCTAGGGTCTTTGGGTCTTCCTTGAGGATGCGGTTGGAGAGCGTAACAGCGTCTATTGGT
 
. : . : . : . : . : . :
JMFS008G10+ TGGGCCGACGGCGGCGGCAACGGCGGCGCTGGAAGTGTGAGAGAGGCGGAGAGGTGGCGG
JMSF019C09+ TGGGCCGACGGCGGCGGCAACGGCGGCGCTGGAAGTGTGAGAGAGGCGGAGAGGTGGCGG
JMSF025M07+ TGGGCCGACGGCGGCGGCAACGGCGGCGCTGGAAGTGTGAGAGAGGCGGAGAGGTGGCGG
                      ____________________________________________________________
consensus TGGGCCGACGGCGGCGGCAACGGCGGCGCTGGAAGTGTGAGAGAGGCGGAGAGGTGGCGG
 
. : . : . : . : . : . :
JMFS008G10+ GACAAGGAAAAGGGCTTAACGGGGGCGCTGGTGGGGATTGTACTTTTGAGTCTGAACATT
JMSF019C09+ GAC
JMSF025M07+ GACAAGGAAAAGGGCTTAACGGGGGCGCTGGTGGGGATTGTACTTTTGAGTCTGAACATT
                      ____________________________________________________________
consensus GACAAGGAAAAGGGCTTAACGGGGGCGCTGGTGGGGATTGTACTTTTGAGTCTGAACATT
 
. : . : . : . : . : . :
JMFS008G10+ TTCTGGAGCAAGAACATAGAACCTCACCCTCAATGTTGATCG
JMSF025M07+ TTCTGGAGCAAGAACATAGAACCTCACCCTCAATGTTGATCGAAAAATAAAACCAATTGA
                      ____________________________________________________________
consensus TTCTGGAGCAAGAACATAGAACCTCACCCTCAATGTTGATCGAAAAATAAAACCAATTGA
 
. : . : . : . : . : . :
JMSF025M07+ AGAATGATCCCTAATTAGCCCTCTATCTTGAATCAGTATAATCAAATTGATCATCACCCC
                      ____________________________________________________________
consensus AGAATGATCCCTAATTAGCCCTCTATCTTGAATCAGTATAATCAAATTGATCATCACCCC