| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF017P11 | Sequence | 459 | 005106 (4) | 747 | 012581 (4) | emb|CDO97619.1| | 1e-61 | unnamed protein product [Coffea canephora] | |||
| JMSF025H03 | Sequence | 608 | 005106 (4) | ref|XP_009598695.1| | 6e-08 | PREDICTED: MACPF domain-containing protein At4g24290 [Nicotiana tomentosiformis | 775 | 012581 (4) | emb|CDO97619.1| | 4e-70 | unnamed protein product [Coffea canephora] |
| JMSF028N22 | Sequence | 660 | 005106 (4) | ref|XP_009782294.1| | 2e-20 | PREDICTED: MACPF domain-containing protein At4g24290 [Nicotiana sylvestris] ref | 654 | 012581 (4) | emb|CDO97619.1| | 4e-65 | unnamed protein product [Coffea canephora] |
| JMSF030I24 | Sequence | 647 | 005106 (4) | ref|XP_009782294.1| | 2e-17 | PREDICTED: MACPF domain-containing protein At4g24290 [Nicotiana sylvestris] ref | 664 | 012581 (4) | emb|CDO97619.1| | 1e-40 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF028N22+ CCTTTATCACATTTGATGGACTTGG
JMSF030I24+ TGATGGACTTGG
____________________________________________________________
consensus CCTTTATCACATTTGATGGACTTGG
. : . : . : . : . : . :
JMSF028N22+ GTACATCGGGGACCAAAATCCCACCAGGAAGAACAATCTCTTGGCCCTTATCCTCGTCAA
JMSF030I24+ GTACATCGGGGACCAAAATCCCACCAGGAAGAACAATCTCTTGGCCCTTATCCTCGTCAA
JMSF025H03+ CTCGTCAA
____________________________________________________________
consensus GTACATCGGGGACCAAAATCCCACCAGGAAGAACAATCTCTTGGCCCTTATCCTCGTCAA
. : . : . : . : . : . :
JMSF028N22+ TCTCAATCAAACGCCGACTACATGGATCCCCTTTGCAATATTTAAGCCGCAAGTCCAAGG
JMSF030I24+ TCTCAATCAAACGCCGACTACATGGATCCCCTTTGCAATATTTAAGCCGCAAGTCCAAGG
JMSF025H03+ TCTCAATCAAACGCCGACTACATGGATCCCCTTTGCAATATTTAAGCCGCAAGTCCAAGG
____________________________________________________________
consensus TCTCAATCAAACGCCGACTACATGGATCCCCTTTGCAATATTTAAGCCGCAAGTCCAAGG
. : . : . : . : . : . :
JMSF028N22+ ATATATCATACCCGCATCCTATCGACAGAATGGCTGCCTTGGCTGCTTCGGCAGCTGGAA
JMSF030I24+ ATATATCATACCCGCATCCTATCGACAGAATGGCTGCCTTGGCTGCTTCGGCAGCTGGAA
JMSF025H03+ ATATATCATACCCGCATCCTATCGACAGAATGGCTGCCTTGGCTGCTTCGGCAGCTGGAA
____________________________________________________________
consensus ATATATCATACCCGCATCCTATCGACAGAATGGCTGCCTTGGCTGCTTCGGCAGCTGGAA
. : . : . : . : . : . :
JMSF028N22+ GCTTTAGTGCCATTGTTCAGAAAACCACTCCCAAATTACTCATGAATATTTCTACTCAAA
JMSF030I24+ GCTTTAGTGCCATTGTTCAGAAAACCACTCCCAAATTACTCATGAATATTTCTACTCAAA
JMSF017P11+ CCACTCCCAAATTACTCATGAATATTTCTACTCAAA
JMSF025H03+ GCTTTAGTGCCATTGTTCAGAAAACCACTCCCAAATTACTCATGAATATTTCTACTCAAA
____________________________________________________________
consensus GCTTTAGTGCCATTGTTCAGAAAACCACTCCCAAATTACTCATGAATATTTCTACTCAAA
. : . : . : . : . : . :
JMSF028N22+ GATTCCCCCTTTTAAGCTTGAAACTAAACTAAACTACAGTTGGCACAACAATCCAATCAA
JMSF030I24+ GATTCCCCCTTTTAAGCTTGAAACTAAACTAAACTACAGTTGGCACAACAATCCAATCAA
JMSF017P11+ GATTCCCCCTTTTAAGCTTGAAACTAAACTAAACTACAGTTGGCACAACAATCCAATCAA
JMSF025H03+ GATTCCCCCTTTTAAGCTTGAAACTAAACTAAACTACAGTTGGCACAACAATCCAATCAA
____________________________________________________________
consensus GATTCCCCCTTTTAAGCTTGAAACTAAACTAAACTACAGTTGGCACAACAATCCAATCAA
. : . : . : . : . : . :
JMSF028N22+ TTATAGTAGCATCGGGGTGGGAAAAATGGGAATTGTAAACCAACGGAAAATCCTAAAAAA
JMSF030I24+ TTATAGTAGCATCGGGGTGGGAAAAATGGGAATTGTAAACCAACGGAAAATCCTAAAAAA
JMSF017P11+ TTATAGTAGCATCGGGGTGGGAAAAATGGGAATTGTAAACCAACGGAAAATCCTAAAAAA
JMSF025H03+ TTATAGTAGCATCGGGGTGGGAAAAATGGGAATTGTAAACCAACGGAAAATCCTAAAAAA
____________________________________________________________
consensus TTATAGTAGCATCGGGGTGGGAAAAATGGGAATTGTAAACCAACGGAAAATCCTAAAAAA
. : . : . : . : . : . :
JMSF028N22+ AATTCCACTGCTCCTTTTTACCGGATTCCGCCGCACCCAAGTCAGATACAGAGTTGACTG
JMSF030I24+ AATTCCACTGCTCCTTTTTACCGGATTCCGCCGCACCCAAGTCAGATACAGAGTTGACTG
JMSF017P11+ AATTCCACTGCTCCTTTTTACCGGATTCCGCCGCACCCAAGTCAGATACAGAGTTGACTG
JMSF025H03+ AATTCCACTGCTCCTTTTTACCGGATTCCGCCGCACCCAAGTCAGATACAGAGTTGACTG
____________________________________________________________
consensus AATTCCACTGCTCCTTTTTACCGGATTCCGCCGCACCCAAGTCAGATACAGAGTTGACTG
. : . : . : . : . : . :
JMSF028N22+ CACAGAAATTCGGCCACAAAACCCTAGAGCCTCGGCCGTACAAAATGCACATGAAACCGC
JMSF030I24+ CACAGAAATTCGGCCACAAAACCCTAGAGCCTCGGCCGTACAAAATGCACATGAAACCGC
JMSF017P11+ CACAGAAATTCGGCCACAAAACCCTAGAGCCTCGGCCGTACAAAATGCACATGAAACCGC
JMSF025H03+ CACAGAAATTCGGCCACAAAACCCTAGAGCCTCGGCCGTACAAAATGCACATGAAACCGC
____________________________________________________________
consensus CACAGAAATTCGGCCACAAAACCCTAGAGCCTCGGCCGTACAAAATGCACATGAAACCGC
. : . : . : . : . : . :
JMSF028N22+ GAGCCTTTTATAATTTTGAACTCGCACGAGCTCGAACCTCTACCCGCTATGAGCTGATGA
JMSF030I24+ GAGCCTTTTATAATTTTGAACTCGCACGAGCTCGAACCTCTACCCGCTATGAGCTGATGA
JMSF017P11+ GAGCCTTTTATAATTTTGAACTCGCACGAGCTCGAACCTCTACCCGCTATGAGCTGATGA
JMSF025H03+ GAGCCTTTTATAATTTTGAACTCGCACGAGCTCGAACCTCTACCCGCTATGAGCTGATGA
____________________________________________________________
consensus GAGCCTTTTATAATTTTGAACTCGCACGAGCTCGAACCTCTACCCGCTATGAGCTGATGA
. : . : . : . : . : . :
JMSF028N22+ GATTGAGGATATAATTCAGCTCAGATCTAGAGAGATAATGCATCGGCGGAGGGTTGGAGG
JMSF030I24+ GATTGAGGATATAATTCAGCTCAGATCTAGAGAGATAATGCATCGGCGGAGGGTTGGAGG
JMSF017P11+ GATTGAGGATATAATTCAGCTCAGATCTAGAGAGATAATGCATCGGCGGAGGGTTGGAGG
JMSF025H03+ GATTGAGGATATAATTCAGCTCAGATCTAGAGAGATAATGCATCGGCGGAGGGTTGGAGG
____________________________________________________________
consensus GATTGAGGATATAATTCAGCTCAGATCTAGAGAGATAATGCATCGGCGGAGGGTTGGAGG
. : . : . : . : . : . :
JMSF028N22+ TTGGGAGACTCCAAGTCGTGTCGAATTGAGTGGC
JMSF030I24+ TTGGGAGACTCCAAGTCGTGTCGAATTGAGTGGC
JMSF017P11+ TTGGGAGACTCCAAGTCGTGTCGAATTGAGTGGCAAACAGCACGGTCATAGAGACC
JMSF025H03+ TTGGGAGACTCCAAGTCGTGTCGAATTGAGTGGCAAACAGCACGGTCATAGAGACCTTTC
____________________________________________________________
consensus TTGGGAGACTCCAAGTCGTGTCGAATTGAGTGGCAAACAGCACGGTCATAGAGACCTTTC