| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031F05 | Sequence | 565 | 005105 (4) | ref|XP_006364388.1| | 1e-91 | PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X1 | 779 | 012380 (4) | emb|CDO98623.1| | 3e-104 | unnamed protein product [Coffea canephora] |
| JMFF036P22 | Sequence | 565 | 005105 (4) | ref|XP_006364388.1| | 8e-101 | PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X1 | 741 | 012380 (4) | emb|CDO98623.1| | 1e-100 | unnamed protein product [Coffea canephora] |
| JMSF010N24 | Sequence | 314 | 005105 (4) | ref|XP_006364388.1| | 5e-43 | PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X1 | 752 | 012380 (4) | emb|CDO98623.1| | 2e-125 | unnamed protein product [Coffea canephora] |
| JMSF025D18 | Sequence | 671 | 005105 (4) | ref|XP_006364388.1| | 4e-113 | PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X1 | 763 | 012380 (4) | emb|CDO98623.1| | 2e-100 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF025D18+ TCNTCCAACAG
____________________________________________________________
consensus TCNTCCAACAG
. : . : . : . : . : . :
JMFF036P22+ TTTCAATATGTTAGCAAGAG
JMSF025D18+ GTATGACATAGGGCTTTCTCCCTTCGTGCAACAATTTTTCTTTCAATATGTTAGCAAGAG
____________________________________________________________
consensus GTATGACATAGGGCTTTCTCCCTTCGTGCAACAATTTTTCTTTCAATATGTTAGCAAGAG
. : . : . : . : . : . :
JMFF031F05+ AAACAAGATCAATGTGAGCTCCAACTA
JMFF036P22+ CCACACTGCCAACTTTTGCATATTCTTCTTTTGAAACAAGATCAATGTGAGCTCCAACTA
JMSF025D18+ CCACACTGCCAACTTTTGCATATTCTTCTTTTGAAACAAGATCAATGTGAGCTCCAACTA
____________________________________________________________
consensus CCACACTGCCAACTTTTGCATATTCTTCTTTTGAAACAAGATCAATGTGAGCTCCAACTA
. : . : . : . : . : . :
JMFF031F05+ AGCGCTCAACAAGGAGATTCCCTGTCAATCCTGGATCTTTATCCACAAGGACCTTGGAAG
JMFF036P22+ AGCGCTCAACAAGGAGATTCCCTGTCAATCCTGGATCTTTATCCACAAGGACCTTGGAAG
JMSF025D18+ AGCGCTCAACAAGGAGATTCCCTGTCAATCCTGGATCTTTATCCACAAGGACCTTGGAAG
____________________________________________________________
consensus AGCGCTCAACAAGGAGATTCCCTGTCAATCCTGGATCTTTATCCACAAGGACCTTGGAAG
. : . : . : . : . : . :
JMFF031F05+ TTCGCAGTATAAGATAACAGTCAAGGTTCAAATACTTGGCAGCAACAGCAGTAGCACGGC
JMFF036P22+ TTCGCAGTATAAGATAACAGTCAAGGTTCAAATACTTGGCAGCAACAGCAGTAGCACGGC
JMSF025D18+ TTCGCAGTATAAGATAACAGTCAAGGTTCAAATACTTGGCAGCAACAGCAGTAGCACGGC
____________________________________________________________
consensus TTCGCAGTATAAGATAACAGTCAAGGTTCAAATACTTGGCAGCAACAGCAGTAGCACGGC
. : . : . : . : . : . :
JMFF031F05+ AATGATTACTTTGAATGCCGCCTAAAGTGATAATGCAGTCTGCTCCCTGTGCCACAGCAT
JMSF010N24+ CCTGTGCCACAGCAT
JMFF036P22+ AATGATTACTTTGAATGCCGCCTAAAGTGATAATGCAGTCTGCTCCCTGTGCCACAGCAT
JMSF025D18+ AATGATTACTTTGAATGCCGCCTAAAGTGATAATGCAGTCTGCTCCCTGTGCCACAGCAT
____________________________________________________________
consensus AATGATTACTTTGAATGCCGCCTAAAGTGATAATGCAGTCTGCTCCCTGTGCCACAGCAT
. : . : . : . : . : . :
JMFF031F05+ CTGCCATCAAGAATTCCAGTTTCCTCACCTTGTTACCACTCAACTGCATTCCTGAAAGAT
JMSF010N24+ CTGCCATCAAGAATTCCAGTTTCCTCACCTTGTTACCACTCAACTGCATTCCTGAAAGAT
JMFF036P22+ CTGCCATCAAGAATTCCAGTTTCCTCACCTTGTTACCACTCAACTGCATTCCTGAAAGAT
JMSF025D18+ CTGCCATCAAGAATTCCAGTTTCCTCACCTTGTTACCACTCAACTGCATTCCTGAAAGAT
____________________________________________________________
consensus CTGCCATCAAGAATTCCAGTTTCCTCACCTTGTTACCACTCAACTGCATTCCTGAAAGAT
. : . : . : . : . : . :
JMFF031F05+ CATCACGCTTCAACCAGACCTCGGTGTTTGTAGGCAGATTGGGCAAGTTCCATATGTGAA
JMSF010N24+ CATCACGCTTCAACCAGACCTCGGTGTTTGTAGGCAGATTGGGCAAGTTCCATATGTGAA
JMFF036P22+ CATCACGCTTCAACCAGACCTCGGTGTTTGTAGGCAGATTGGGCAAGTTCCATATGTGAA
JMSF025D18+ CATCACGCTTCAACCAGACCTCGGTGTTTGTAGGCAGATTGGGCAAGTTCCATATGTGAA
____________________________________________________________
consensus CATCACGCTTCAACCAGACCTCGGTGTTTGTAGGCAGATTGGGCAAGTTCCATATGTGAA
. : . : . : . : . : . :
JMFF031F05+ TTGGAGTAGGAAAGTTTCCGAGGGAAAAGACGTCAGAGGGGACGGGGCTGAGAGAAGAAG
JMSF010N24+ TTGGAGTAGGAAAGTTTCCGAGGGAAAAGACGTCAGAGGGGACGGGGCTGAGAGAAGAAG
JMFF036P22+ TTGGAGTAGGAAAGTTTCCGAGGGAAAAGACGTCAGAGGGGACGGGGCTGAGAGAAGAAG
JMSF025D18+ TTGGAGTAGGAAAGTTTCCGAGGGAAAAGACGTCAGAGGGGACGGGGCTGAGAGAAGAAG
____________________________________________________________
consensus TTGGAGTAGGAAAGTTTCCGAGGGAAAAGACGTCAGAGGGGACGGGGCTGAGAGAAGAAG
. : . : . : . : . : . :
JMFF031F05+ CCCAAGTAGGAGGCTGATAAGGCTTCTTGGTCAGAAATTGGAAAGGGTTTGATGCATCCT
JMSF010N24+ CCCAAGTAGGAGGCTGATAAGGCTTCTTGGTCAGAAATTGGAAAGGGTTTGATGCATCCT
JMFF036P22+ CCCAAGTAGGAGGCTGATAAGGCTTCTTGGTCAGAAATTGGAAAGGGTTTGATGCATCCT
JMSF025D18+ CCCAAGTAGGAGGCTGATAAGGCTTCTTGGTCAGAAATTGGAAAGGGTTTGATGCATCCT
____________________________________________________________
consensus CCCAAGTAGGAGGCTGATAAGGCTTCTTGGTCAGAAATTGGAAAGGGTTTGATGCATCCT
. : . : . : . : . : . :
JMFF031F05+ CCATGATTGCTGCCTTCTTCTTGGTGTTTGCTACCGAAGAGTAATCGCAGCAAATTTGGC
JMSF010N24+ CCATGATTGCTGCCTTCTTCTTGGTGTTTGCTACCGAAGAGTAATCGCAGCAAATTT
JMFF036P22+ CCATGATTGCTGCCTTCTTCTTGGTGTTTGCTACCGAAGAGTAATCGCAGCAAATTT
JMSF025D18+ CCATGATTGCTGCCTTCTTCTTGGTGTTTGCTACCGAAGAGTAATCGCAGCAAATTTGGC
____________________________________________________________
consensus CCATGATTGCTGCCTTCTTCTTGGTGTTTGCTACCGAAGAGTAATCGCAGCAAATTTGGC
. : . : . : . : . : . :
JMFF031F05+ TGCTCAGCTTTTGCTGTGTATTTTTTGTGCTCGAAATCACACAGCTGCAGTTGCTGCT
JMSF025D18+ TGCTCAGCTTTTGCTGTGTATTTTTTGTGCTCGAAATCACACAGCTGCAGTTGCTGCTCC
____________________________________________________________
consensus TGCTCAGCTTTTGCTGTGTATTTTTTGTGCTCGAAATCACACAGCTGCAGTTGCTGCTCC