Contig 005103:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN002D12Sequence572005103 (5)ref|XP_008442779.1|3e-76PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]
JMFN007O20Sequence627005103 (5)ref|XP_008442779.1|1e-74PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]
JMSF025B03Sequence651005103 (5)ref|XP_008442779.1|8e-76PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]712005103 (5)ref|XP_008442779.1|2e-75PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]
JMSF038D06Sequence677005103 (5)ref|XP_008442779.1|8e-76PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]

Alignment

This contig is upended


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JMFN002D12+                                                     TAATATGTAAACAACAAA
JMSF025B03+                    TCATTAAACAAACAACATTACAGCTATAACTCTTAATATGTAAACAACAAA
                      ____________________________________________________________
consensus                      TCATTAAACAAACAACATTACAGCTATAACTCTTAATATGTAAACAACAAA
 
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rJMSF025B03-                                                                TTGGTG
JMFN007O20+                                                                 TTGGTG
JMSF038D06+                                                                 TTGGTG
JMFN002D12+           AAGATCATAGAGCTCAGCGTTTTCCACCACCTCCACCAAGCTTAGGACCTTTTGTTGGTG
JMSF025B03+           AAGATCATAGAGCTCAGCGTTTTCCACCACCTCCACCAAGCTTAGGACCTTTTGTTGGTG
                      ____________________________________________________________
consensus             AAGATCATAGAGCTCAGCGTTTTCCACCACCTCCACCAAGCTTAGGACCTTTTGTTGGTG
 
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rJMSF025B03-          CAGCGCCCTTGGGAATGTTACCCTTCCCTGCCTTCTGCGACTTGGCCATCACCTCTGCCT
JMFN007O20+           CAGCGCCCTTGGGAATGTTACCCTTCCCTGCCTTCTGCGACTTGGCCATCACCTCTGCCT
JMSF038D06+           CAGCGCCCTTGGGAATGTTACCCTTCCCTGCCTTCTGCGACTTGGCCATCACCTCTGCCT
JMFN002D12+           CAGCGCCCTTGGGAATGTTACCCTTCCCTGCCTTCTGCGACTTGGCCATCACCTCTGCCT
JMSF025B03+           CAGCGCCCTTGGGAATGTTACCCTTCCCTGCCTTCTGCGACTTGGCCATCACCTCTGCCT
                      ____________________________________________________________
consensus             CAGCGCCCTTGGGAATGTTACCCTTCCCTGCCTTCTGCGACTTGGCCATCACCTCTGCCT
 
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rJMSF025B03-          TCTTGGACTTCTTTTCATCTTTTGTCTTCTTGATCCTTTCCTTAATTTCACGGAGAGCAG
JMFN007O20+           TCTTGGACTTCTTTTCATCTTTTGTCTTCTTGATCCTTTCCTTAATTTCACGGAGAGCAG
JMSF038D06+           TCTTGGACTTCTTTTCATCTTTTGTCTTCTTGATCCTTTCCTTAATTTCACGGAGAGCAG
JMFN002D12+           TCTTGGACTTCTTTTCATCTTTTGTCTTCTTGATCCTTTCCTTAATTTCACGGAGAGCAG
JMSF025B03+           TCTTGGACTTCTTTTCATCTTTTGTCTTCTTGATCCTTTCCTTAATTTCACGGAGAGCAG
                      ____________________________________________________________
consensus             TCTTGGACTTCTTTTCATCTTTTGTCTTCTTGATCCTTTCCTTAATTTCACGGAGAGCAG
 
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rJMSF025B03-          CCTCCCTTGCAGCATCTCGGACTTCTGGTTTTTCACTTCTTTTCTTCTGGATTACCTCCA
JMFN007O20+           CCTCCCTTGCAGCATCTCGGACTTCTGGTTTTTCACTTCTTTTCTTCTGGATTACCTCCA
JMSF038D06+           CCTCCCTTGCAGCATCTCGGACTTCTGGTTTTTCACTTCTTTTCTTCTGGATTACCTCCA
JMFN002D12+           CCTCCCTTGCAGCATCTCGGACTTCTGGTTTTTCACTTCTTTTCTTCTGGATTACCTCCA
JMSF025B03+           CCTCCCTTGCAGCATCTCGGACTTCTGGTTTTTCACTTCTTTTCTTCTGGATTACCTCCA
                      ____________________________________________________________
consensus             CCTCCCTTGCAGCATCTCGGACTTCTGGTTTTTCACTTCTTTTCTTCTGGATTACCTCCA
 
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rJMSF025B03-          AGGTTGCACCAACAATAGATCTAGAGTAAGGCTTCTTTGCGGTCCTTCTCCTCTTCTTAA
JMFN007O20+           AGGTTGCACCAACAATAGATCTAGAGTAAGGCTTCTTTGCGGTCCTTCTCCTCTTCTTAA
JMSF038D06+           AGGTTGCACCAACAATAGATCTAGAGTAAGGCTTCTTTGCGGTCCTTCTCCTCTTCTTAA
JMFN002D12+           AGGTTGCACCAACAATAGATCTAGAGTAAGGCTTCTTTGCGGTCCTTCTCCTCTTCTTAA
JMSF025B03+           AGGTTGCACCAACAATAGATCTAGAGTAAGGCTTCTTTGCGGTCCTTCTCCTCTTCTTAA
                      ____________________________________________________________
consensus             AGGTTGCACCAACAATAGATCTAGAGTAAGGCTTCTTTGCGGTCCTTCTCCTCTTCTTAA
 
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rJMSF025B03-          CAGCCTCTTGTGCAAGATCCTTCTTGTGCTGTTTCCTGTACACAGCAGTCCAAGTAAGCT
JMFN007O20+           CAGCCTCTTGTGCAAGATCCTTCTTGTGCTGTTTCCTGTACACAGCAGTCCAAGTAAGCT
JMSF038D06+           CAGCCTCTTGTGCAAGATCCTTCTTGTGCTGTTTCCTGTACACAGCAGTCCAAGTAAGCT
JMFN002D12+           CAGCCTCTTGTGCAAGATCCTTCTTGTGCTGTTTCCTGTACACAGCAGTCCAAGTAAGCT
JMSF025B03+           CAGCCTCTTGTGCAAGATCCTTCTTGTGCTGTTTCCTGTACACAGCAGTCCAAGTAAGCT
                      ____________________________________________________________
consensus             CAGCCTCTTGTGCAAGATCCTTCTTGTGCTGTTTCCTGTACACAGCAGTCCAAGTAAGCT
 
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rJMSF025B03-          TGGAAGGTTTCAAACGGTTGTGAAAATACCTCTTGCATTTTGAATTGGCAAACAAGAAAA
JMFN007O20+           TGGAAGGTTTCAAACGGTTGTGAAAATACCTCTTGCATTTTGAATTGGCAAACAAGAAAA
JMSF038D06+           TGGAAGGTTTCAAACGGTTGTGAAAATACCTCTTGCATTTTGAATTGGCAAACAAGAAAA
JMFN002D12+           TGGAAGGTTTCAAACGGTTGTGAAAATACCTCTTGCATTTTGAATTGGCAAACAAGAAAA
JMSF025B03+           TGGAAGGTTTCAAACGGTTGTGAAAATACCTCTTGCATTTTGAATTGGCAAACAAGAAAA
                      ____________________________________________________________
consensus             TGGAAGGTTTCAAACGGTTGTGAAAATACCTCTTGCATTTTGAATTGGCAAACAAGAAAA
 
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rJMSF025B03-          CCTGAGAATCTGCACGGACAAATCTAATGCCCTTCCCAGGATATATCTTGGCACCACTGA
JMFN007O20+           CCTGAGAATCTGCACGGACAAATCTAATGCCCTTCCCAGGATATATCTTGGCACCACTGA
JMSF038D06+           CCTGAGAATCTGCACGGACAAATCTAATGCCCTTCCCAGGATATATCTTGGCACCACTGA
JMFN002D12+           CCTGAGAATCTGCACGGACAAATCTAATGCCCTTCCCAGGATATATCTTGGCACCACTGA
JMSF025B03+           CCTGAGAATCTGCACGGACAAATCTAATGCCCTTCCCAGGATATATCTTGGCACCACTGA
                      ____________________________________________________________
consensus             CCTGAGAATCTGCACGGACAAATCTAATGCCCTTCCCAGGATATATCTTGGCACCACTGA
 
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rJMSF025B03-          AACGGCAGAGTTCTGTCTTGAGAACCATGGC                             
JMFN007O20+           AACGGCAGAGTTCTGTCTTGAGAACC                                  
JMSF038D06+           AACGGCAGAGTTCTGTCTTGAGAACCATGGCTGCTGAGAGCTGTGTTGGCGGTGTTGCTG
JMFN002D12+           AACGGCAGAGTTCTGTCTTGAGAACCATGGCTGCTGAGAGCTGTGTTGGCGGTGTTGCTG
JMSF025B03+           AACGGCAGAGTTCTGTCTTGAGAACCATGGCTGCTGAGAGCTGTGTTGGCGGTGTTGCTG
                      ____________________________________________________________
consensus             AACGGCAGAGTTCTGTCTTGAGAACCATGGCTGCTGAGAGCTGTGTTGGCGGTGTTGCTG
 
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JMSF038D06+           TACCTCT                                                     
JMFN002D12+           TACCTCT                                                     
JMSF025B03+           TACCTCTGGGAGAGAAAAACCCTAATCATAAATTCTTTTTATGATACCGGACCAAGGTTC
                      ____________________________________________________________
consensus             TACCTCTGGGAGAGAAAAACCCTAATCATAAATTCTTTTTATGATACCGGACCAAGGTTC