| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002K10 | Sequence | 560 | 005095 (5) | ref|XP_006344882.1| | 3e-75 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 737 | 002503 (5) | ref|XP_006344882.1| | 7e-10 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] |
| JMFF005L03 | Sequence | 479 | 005095 (5) | ref|XP_006344882.1| | 8e-58 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 299 | 002503 (5) | |||
| JMFS072A09 | Sequence | 627 | 005095 (5) | ref|XP_006344882.1| | 4e-108 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | |||||
| JMSF017E04 | Sequence | 239 | 005095 (5) | ref|XP_009790873.1| | 6e-09 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Nicotiana | 790 | 002503 (5) | ref|XP_006352533.1| | 1e-20 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] |
| JMSF023O11 | Sequence | 664 | 005095 (5) | ref|XP_006352343.1| | 2e-66 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 779 | 002503 (5) | ref|XP_006352533.1| | 1e-17 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFS072A09+ AGGTTTTATACAATGCCCTATCCACCGCATCCTCCGAATC
JMSF023O11+ GAATC
____________________________________________________________
consensus AGGTTTTATACAATGCCCTATCCACCGCATCCTCCGAATC
. : . : . : . : . : . :
JMFS072A09+ ATAAGTTATGAACCCGAACCCTCTTGGCCGTTGAGTGTTGTGGTCGTACATCACAACCAC
JMSF023O11+ ATAAGTTATAAATCCAAACCCTCTCGGGCGTTGAGTGTTGTGGTCATACATCACTACAAC
____________________________________________________________
consensus ATAAGTTATGAATCCGAACCCTCTTGGGCGTTGAGTGTTGTGGTCGTACATCACTACCAC
. : . : . : . : . : . :
JMFS072A09+ ATCCGTGATCGTGCCAAACTGATCAAAGTACTTCTTAAAGTCACTTTCGGTAACTGTGGA
JMFF002K10+ CCAAACTGGTCAAAGTAATTCTTAAAGTCATTCTCAGTGACAGTAGA
JMSF023O11+ ATCTGTAATTGTACCAAACTGGTCAAAGTAATTCTTAAAGTCATTCTCAGTGACAGTAGA
____________________________________________________________
consensus ATCTGTGATTGTGCCAAACTGGTCAAAGTAATTCTTAAAGTCATTCTCAGTGACAGTAGA
. : . : . : . : . : . :
JMFS072A09+ TGCTAACCCTCCTACAAAAATCTTTTTTGTGCGTCCAGGACCCGGAGACCCTTGAATGCT
JMFF005L03+ GTGCGTCCAGGACCCGGAGATCCTTGAATTCC
JMFF002K10+ TGCTAATCCTCCTACAAATATCTTTTTAGTGCGTCCAGGACCCGGAGATCCTTGAATTCC
JMSF023O11+ TGCTAATCCTCCTACAAATATCTTTTTAGTGCGTCCAGGACCCGGAGATCCTTGAATTCC
____________________________________________________________
consensus TGCTAATCCTCCTACAAATATCTTTTTAGTGCGTCCAGGACCCGGAGATCCTTGAATTCC
. : . : . : . : . : . :
JMFS072A09+ GCTATTGCTTCTATTTATTATGTTTTGGTCATCCCTAGGTACAGCCTTCTTCGCCTCAAC
JMFF005L03+ ACCATTGTTTCTATTTATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
JMFF002K10+ ACCATTGTTTCTATTTATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
JMSF023O11+ ACCATTGTTTCTA-TCATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
____________________________________________________________
consensus ACCATTGTTTCTATTTATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
. : . : . : . : . : . :
JMFS072A09+ AGTTCTTCCATCTATCATATGCTTCTCCTTCACCACTCGTTCAGCAACTGCAGGATCAGC
JMFF005L03+ GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
JMFF002K10+ GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
JMSF023O11+ GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
____________________________________________________________
consensus GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
. : . : . : . : . : . :
JMFS072A09+ AAAGACCACAAAACCGAAACCTCGGGCACGACCAGTGTTGCGATCTCTCATGATCACAGC
JMFF005L03+ AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
JMFF002K10+ AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
JMSF023O11+ AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
____________________________________________________________
consensus AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
. : . : . : . : . : . :
JMFS072A09+ CTCAACCACTTCTCCATACGATCTAAAATACTCTTTAAGACGATCCTCATCCGTGTCCCA
JMFF005L03+ CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
JMFF002K10+ CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
JMSF017E04+ TCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
JMSF023O11+ CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
____________________________________________________________
consensus CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
. : . : . : . : . : . :
JMFS072A09+ AGATATTCCACCAATGAATAGCTTACCGAGATCCGATTCCATCATT
JMFF005L03+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
JMFF002K10+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
JMSF017E04+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
JMSF023O11+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
____________________________________________________________
consensus AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
. : . : . : . : . : . :
JMFF005L03+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
JMFF002K10+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
JMSF017E04+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
JMSF023O11+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
____________________________________________________________
consensus CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
. : . : . : . : . : . :
JMFF005L03+ CCTGTTGCATCAATCAAAGCCCAATCCAACAGCT
JMFF002K10+ CCTGTTGCATCAATCAAAACCCAATCCAACAGCT
JMSF017E04+ CCTGTTGCATCAATCAAAACCCAATCCAACAGCT
JMSF023O11+ CCTGTTGCATCAATCAAAACCCAATCCAACAGCTGGATTTTATATGTAGAAGAAGAAAAC
____________________________________________________________
consensus CCTGTTGCATCAATCAAAACCCAATCCAACAGCTGGATTTTATATGTAGAAGAAGAAAAC
. : . : . : . : . : . :
JMSF023O11+ AGAGGATGTGCTCATCCTCTCTCTCCCTTTCTCTTTCTCCAAAAGTCCCTCTCTTCTGTC
____________________________________________________________
consensus AGAGGATGTGCTCATCCTCTCTCTCCCTTTCTCTTTCTCCAAAAGTCCCTCTCTTCTGTC