| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS007G12 | Sequence | 612 | 005088 (5) | gb|ABV69554.1| | 9e-56 | RelA/SpoT-like protein [Ipomoea nil] | |||||
| JMFS036E09 | Sequence | 512 | 005088 (5) | gb|ABV69554.1| | 6e-24 | RelA/SpoT-like protein [Ipomoea nil] | |||||
| JMFS116A05 | Sequence | 536 | 005088 (5) | gb|ABV69554.1| | 2e-30 | RelA/SpoT-like protein [Ipomoea nil] | |||||
| JMSF023F23 | Sequence | 694 | 005088 (5) | gb|ABV69554.1| | 4e-18 | RelA/SpoT-like protein [Ipomoea nil] | 774 | 012617 (2) | gb|ABV69554.1| | 6e-155 | RelA/SpoT-like protein [Ipomoea nil] |
| JMSF031B11 | Sequence | 619 | 005088 (5) | gb|ABV69554.1| | 2e-44 | RelA/SpoT-like protein [Ipomoea nil] | 742 | 012617 (2) | gb|ABV69554.1| | 1e-158 | RelA/SpoT-like protein [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
JMFS007G12+ AGAATCCGAATCCCGCAAATGTAAGTTCACCGGATCGTAGTCCACGCACGAG
JMSF031B11+ AATGTAAGTTCACCGGATNGTAGTCCACGCACGAG
____________________________________________________________
consensus AGAATCCGAATCCCGCAAATGTAAGTTCACCGGATCGTAGTCCACGCACGAG
. : . : . : . : . : . :
JMFS116A05+ CGAACCCATTAATCAACCCACCACTTCACCGATCGAGACCAATA
JMFS007G12+ CCCAGTGCGTGTCTAACGAACCCATTAAACAACCCACCACTTC-CCGATCGAGACGAATA
JMSF031B11+ CCCAGTGCGTGTCTAACGAACCCATTAAACAACCCACCACTTC-CCGATCGAGACGAATA
____________________________________________________________
consensus CCCAGTGCGTGTCTAACGAACCCATTAAACAACCCACCACTTC-CCGATCGAGACGAATA
. : . : . : . : . : . :
JMFS116A05+ GCCATCCCCGCCAATTCTCTTGTAAGAACTTCTAGAACACGCTCCAATCCCA-CCACTAC
JMFS007G12+ GAAATCCCCGCCAATTCTCTTGGAAGGACTTCTAGAACACGCTCCAATCCCA-CCACTAC
JMSF031B11+ GAAATCCCCGCCAATTCTCTTGGAAGGACTTCTAGAACACGCTCCAATCCCACCCACTAC
____________________________________________________________
consensus GAAATCCCCGCCAATTCTCTTGGAAGGACTTCTAGAACACGCTCCAATCCCA-CCACTAC
. : . : . : . : . : . :
JMFS116A05+ CATTACTACTCCCCGGACCTTGAAGCACAGTCATAGGGCTGTGATGGCCCTGATCTCGCT
JMFS007G12+ CATTACTACTCCCCGGACCTTGAAGCACAGTCATAGGGCTGTGATGGCCCTGATCTCGCT
JMFS036E09+ CTCCCCGGACCTTGAAGCACAGTCATAGGGCTGTGATGGCCCTGATCTCGGT
JMSF031B11+ CATTACTACTCCCCGGACCTTGAAGCACAGTCATAGGGCTGTGATGGCCCTGATCTCGCT
____________________________________________________________
consensus CATTACTACTCCCCGGACCTTGAAGCACAGTCATAGGGCTGTGATGGCCCTGATCTCGCT
. : . : . : . : . : . :
JMFS116A05+ TCAACGATGAGCTCAGAGACGAACCCCGCAACGAGCTGCTCAATTCCTCGCCTCTATCAT
JMFS007G12+ TCAACGATGAGCTCAGAGACGAACCCCGAAACGAGCTGCTCAATTCCTCGCCTCTATCAT
JMFS036E09+ TCAACGATGAGCTCACAGCCGAACCCCGGAACGAGCTGCTCAATTCCTGGCCTGAGTCAT
JMSF031B11+ TCAACGATGAGCTCAGAGACGAACCCCGAAACGAGCTGCTCAATTCCTCGCCTCTATCAT
JMSF023F23+ AACGAGCTGCTCAATTCCTCGCCTCTATCAT
____________________________________________________________
consensus TCAACGATGAGCTCAGAGACGAACCCCGAAACGAGCTGCTCAATTCCTCGCCTCTATCAT
. : . : . : . : . : . :
JMFS116A05+ GCCACATCGACCCCAAATCCTCAGTCCCGCTAGAAAAACTGGAGGAAGACGAGGCGTGCT
JMFS007G12+ GCCACAACGACCCCAAATCCTCAGTCCCGCTAGAAAAACTGGAGGAAGACGAGGCGTGCT
JMFS036E09+ GCCACAACGACCCCAAATCATCAGTCCCGCTAGAAACACTGGAGGAAGACGAGGCGTGCT
JMSF031B11+ GCCACAACGACCCCAAATCCTCAGTCCCGCTAGAAAAACTGGAGGAAGACGAGGCGTGCT
JMSF023F23+ GCCACAACGACCCCAAATCCTCAGTCCCGCTAGAAAAACTGGAGGAAGACGAGGCGTGCT
____________________________________________________________
consensus GCCACAACGACCCCAAATCCTCAGTCCCGCTAGAAAAACTGGAGGAAGACGAGGCGTGCT
. : . : . : . : . : . :
JMFS116A05+ TCACCGAGTGCGTGGAGAACAAACACTACAACCCGCCAACGGCAGGCTTCTGCGACCAAG
JMFS007G12+ TCACCGACTGCGTGGAGAACAAACACGACAACCCGCCAACGGCAGGCTTCTGCGACGAAG
JMFS036E09+ TCACCGACTGCGTGGAGAGCAAGCACGACACCCCGCCAAGGGCAGGCTTCTCAGACGAAG
JMSF031B11+ TCACCGACTGCGTGGAGAACAAACACGACAACCCGCCAACGGCAGGCTTCTGCGACGAAG
JMSF023F23+ TCACCGACTGCGTGGAGAACAAACACGACAACCCGCCAACGGCAGGCTTCTGCGACGAAG
____________________________________________________________
consensus TCACCGACTGCGTGGAGAACAAACACGACAACCCGCCAACGGCAGGCTTCTGCGACGAAG
. : . : . : . : . : . :
JMFS116A05+ ACGTCGTCGTCGACGCCGCCGACGACGATCTGCTGTTGAAATCGAAGTCGTGGCAGGCGT
JMFS007G12+ ACGTCGTCGTCGACGCCGACGACGACGATCTGCTGTTGAAATCGAAGTCGTGGGAGGCGT
JMFS036E09+ ACGTTGTAGTCGACGCCCACCACGACGATCTGCTGTTGAAATAGAAGTCGTGGAAGGCGT
JMSF031B11+ ACGTCGTCGTCGACGCCGACGACGACGATCTGCTGTTGAAATCGAAGTCGTGGGAGGCGT
JMSF023F23+ ACGTCGTCGTCGACGCCGACGACGACGATCTGCTGTTGAAATCGAAGTCGTGGGAGGCGT
____________________________________________________________
consensus ACGTCGTCGTCGACGCCGACGACGACGATCTGCTGTTGAAATCGAAGTCGTGGGAGGCGT
. : . : . : . : . : . :
JMFS116A05+ GCGAGTTGATCTGCCAAGAGTACGGCGTGGAATACACACTGCTCGGCGGGCTCGCGTACA
JMFS007G12+ GCGAGTTGATCTGACAAGAGTACGGCGTCGAATACACACTGCTCGGCGGGCTCGCGTACA
JMFS036E09+ ACGAGTTGATCTGACAAGAGTACGGCGTAGAATACACACTGCTCGCCGGGCTCGCGTCCA
JMSF031B11+ GCGAGTTGATCTGACAAGAGTACGGCGTCGAATACACACTGCTCGGCGGGCTCGCGTACA
JMSF023F23+ GCGAGTTGATCTGACAAGAGTACGGCGTCGAATACACACTGCTCGGCGGGCTCGCGTACA
____________________________________________________________
consensus GCGAGTTGATCTGACAAGAGTACGGCGTCGAATACACACTGCTCGGCGGGCTCGCGTACA
. : . : . : . : . : . :
JMFS116A05+ GTGCTATCGTCGGAACCGCCATTGCTTCACCCACCCGAGGATCAGATCCACTTTCACACA
JMFS007G12+ GTGCTATCGTCGGAACCGCCATTGCTTCACCCAACCGAGGATCAGATCAACTTTCACACA
JMFS036E09+ GTGCAATCGTCGGACCCGCCACTGCGTCACCCAACCGAGGATCAGATCACCTTTCAC
JMSF031B11+ GTGCTATCGTCGGAACCGCCATTGCTTCACCCAACCGAGGATCAGATCAACTTTCACACA
JMSF023F23+ GTGCTATCGTCGGAACCGCCATTGCTTCACCCAACCGAGGATCAGATCAACTTTCACACA
____________________________________________________________
consensus GTGCTATCGTCGGAACCGCCATTGCTTCACCCAACCGAGGATCAGATCAACTTTCACACA
. : . : . : . : . : . :
JMFS116A05+ AAAATAATCAAAG
JMFS007G12+ AAAATAATCAAAGGCAATCCAA
JMSF031B11+ AAAATAATCAAAGGCAATCCAATCCCCCAACTGTATCACAACCC
JMSF023F23+ AAAATAATCAAAGGCAATCCAATCCCCCAACTGTATCACAACCCAAGGAAACCCTAGATT
____________________________________________________________
consensus AAAATAATCAAAGGCAATCCAATCCCCCAACTGTATCACAACCCAAGGAAACCCTAGATT
. : . : . : . : . : . :
JMSF023F23+ CTGATGCTTATATGCAGGAAAAAGGAATTGCCAATTCCACGTTTCAAACGTGAAGAAAAT
____________________________________________________________
consensus CTGATGCTTATATGCAGGAAAAAGGAATTGCCAATTCCACGTTTCAAACGTGAAGAAAAT
. : . : . : . : . : . :
JMSF023F23+ TCAGACAAAAGAAAATCACAGCCTGCAAATTCAAAAAGTGAATTGCGGAATAAATAGCCG
____________________________________________________________
consensus TCAGACAAAAGAAAATCACAGCCTGCAAATTCAAAAAGTGAATTGCGGAATAAATAGCCG
. : . : . : . : . : . :
JMSF023F23+ AATTTGTTCAGATCTGAGAGAATTGTTTGACTTTTTTGAACCTAAAAAAGAGGAAATGAA
____________________________________________________________
consensus AATTTGTTCAGATCTGAGAGAATTGTTTGACTTTTTTGAACCTAAAAAAGAGGAAATGAA
. : . : . : . : . : . :
JMSF023F23+ ATTGAAATTCCAAAGCTGATTAATCGGAGTGGAAAAATATTGTTGTAAATTCGACGAATT
____________________________________________________________
consensus ATTGAAATTCCAAAGCTGATTAATCGGAGTGGAAAAATATTGTTGTAAATTCGACGAATT
. : . : . : . : . : . :
JMSF023F23+ TTAAAGGGATTTCGTTTCTTCCTTCTTCTGGTCGATAATTATTGCTCTCATATTCTATCC
____________________________________________________________
consensus TTAAAGGGATTTCGTTTCTTCCTTCTTCTGGTCGATAATTATTGCTCTCATATTCTATCC