Contig 005085:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026E01Sequence585005085 (3)ref|XP_009591095.1|9e-79PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A676012614 (4)ref|XP_002315617.2|2e-99leucine-rich repeat family protein [Populus trichocarpa] gb|EEF01788.2| leucine-
JMSF022O04Sequence689005085 (3)ref|XP_009800742.1|1e-51PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A752012614 (4)ref|XP_002315617.2|3e-95leucine-rich repeat family protein [Populus trichocarpa] gb|EEF01788.2| leucine-
JMSF023O04Sequence279005085 (3)252012614 (4)gb|KHG08504.1|9e-31hypothetical protein F383_35684 [Gossypium arboreum]

Alignment

This contig is upended


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JMFF026E01+                                                     CTTAGACTATTGTTCCTA
                      ____________________________________________________________
consensus                                                       CTTAGACTATTGTTCCTA
 
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JMFF026E01+           AGATCAAAACTAACTGTGAGAGGTAAATCACNTAAGGACTTTGGGATCTTTCCATTAAAG
                      ____________________________________________________________
consensus             AGATCAAAACTAACTGTGAGAGGTAAATCACNTAAGGACTTTGGGATCTTTCCATTAAAG
 
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JMFF026E01+           TGATTGAAAGATAAATTAAGAGTTCCGGAAAGGGATTTCAATTCACCTATATCTCCTGGA
                      ____________________________________________________________
consensus             TGATTGAAAGATAAATTAAGAGTTCCGGAAAGGGATTTCAATTCACCTATATCTCCTGGA
 
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JMFF026E01+           ATTGAGCCGTTGAATGAATTGGAGGACAGATCAAGCTGCTGTAAATTCGAAAGCTCCGGG
                      ____________________________________________________________
consensus             ATTGAGCCGTTGAATGAATTGGAGGACAGATCAAGCTGCTGTAAATTCGAAAGCTCCGGG
 
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JMFF026E01+           AAAACCCCCGCCGGAATCTCGCCGGCGAACTTGTTTTTCGCCAGAATTAGCCTCCGTAAC
                      ____________________________________________________________
consensus             AAAACCCCCGCCGGAATCTCGCCGGCGAACTTGTTTTTCGCCAGAATTAGCCTCCGTAAC
 
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JMFF026E01+           TGCCGACAATTCCGGAGGTTGTTTAAGAGCGAACCTGAAAGCGAGTTGTTGGATACATCC
                      ____________________________________________________________
consensus             TGCCGACAATTCCGGAGGTTGTTTAAGAGCGAACCTGAAAGCGAGTTGTTGGATACATCC
 
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JMFF026E01+           AGGTTCTGAAGCCGAGGAGGATTGCAAATAGAAGCCGGGAGCGGGCCGGAAATGTTGTTA
JMSF022O04+                                          AAGCCGGGAGCGGGCCGGAAATGTTGTTA
                      ____________________________________________________________
consensus             AGGTTCTGAAGCCGAGGAGGATTGCAAATAGAAGCCGGGAGCGGGCCGGAAATGTTGTTA
 
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JMFF026E01+           TCGTAGAGAAAAATGCTGTGCAGTGAGGTTCCATTGAACAGAGGCTCCGGTATAGAGCCA
JMSF022O04+           TCGTAGAGAAAAATGCTGTGCAATGAGGTTCCATTGAACAGAGGCTCCGGTATAGAGCCA
                      ____________________________________________________________
consensus             TCGTAGAGAAAAATGCTGTGCAGTGAGGTTCCATTGAACAGAGGCTCCGGTATAGAGCCA
 
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JMFF026E01+           TAGAGGTTATTACCGTGAAGATTGAGTCGTCGGAGATACACTAAAGTTCCGAGCTCCGAC
JMSF022O04+           TAGAGGTTATTACCGTGAAGATTGAGTCGTCGGAGATACACTAAAGTTCCGAGCTCCGAC
                      ____________________________________________________________
consensus             TAGAGGTTATTACCGTGAAGATTGAGTCGTCGGAGATACACTAAAGTTCCGAGCTCCGAC
 
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JMFF026E01+           GGAATATACCCTCTGAGATTCTTCCCTGAGAGTGCGATTCCGACGACACGCGGCTCATCA
JMSF022O04+           GGAATATACCCTCTGAGATTCTTCCCTGAGAGTGCGATTCCGACGACACGCGGCTCATCA
                      ____________________________________________________________
consensus             GGAATATACCCTCTGAGATTCTTCCCTGAGAGTGCGATTCCGACGACACGCGGCTCATCA
 
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JMFF026E01+           GAGCCGGATACGTTCGTGCAGGCGATG                                 
JMSF022O04+           GAGCCGGATACGTTCGTGCAGGCGATGCCAGTCCAGCGGCACGGCGTATCATCGTTCTCG
                      ____________________________________________________________
consensus             GAGCCGGATACGTTCGTGCAGGCGATGCCAGTCCAGCGGCACGGCGTATCATCGTTCTCG
 
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JMSF022O04+           TTCCAGTCGGAAAACGCCCTACCTCCGCCGTCCACGGCGGATTTGAGAGACAGCAAGGAG
                      ____________________________________________________________
consensus             TTCCAGTCGGAAAACGCCCTACCTCCGCCGTCCACGGCGGATTTGAGAGACAGCAAGGAG
 
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JMSF023O04+                                          AAAATTGCAGGTGAAGAGTAAATANCTGG
JMSF022O04+           AGCCCGTCGGAATTCAGAGAAACGACACCGCAAAATTGCAGGTGAAGAGTAAATAACTGG
                      ____________________________________________________________
consensus             AGCCCGTCGGAATTCAGAGAAACGACACCGCAAAATTGCAGGTGAAGAGTAAATAACTGG
 
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JMSF023O04+           AAAATGATAAAATATATAANTNCNGACATCACTTTGTTCTTGTAGGGATCAGTGATCGCA
JMSF022O04+           AAAATGATAAAATATATAATTGCAGACATCACTTTGTTCTTCTAGGGATCAGTGATCGCA
                      ____________________________________________________________
consensus             AAAATGATAAAATATATAATTGCAGACATCACTTTGTTCTTGTAGGGATCAGTGATCGCA
 
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JMSF023O04+           TTATACCCCGCAAGGCCCGGCCGTAATGATAAAGCTTCCACACTTTNTGAGCAAAATCCA
JMSF022O04+           TTATACCCCGCAAGGCCCGGCCGTAATGATAAAGCTTCCACACTTTCTGAGCAAAATCCA
                      ____________________________________________________________
consensus             TTATACCCCGCAAGGCCCGGCCGTAATGATAAAGCTTCCACACTTTCTGAGCAAAATCCA
 
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JMSF023O04+           NACAAAAAAGCAAAACGCTTGTCTCCTTTCGTAATTAGTTGGGAGCTGGGACCATAAGAA
JMSF022O04+           AACAAAAAAGCAAAACGCTTGTCTCCTTTCGTAATTAGTTGGGAGCTGGGACCATAAGAA
                      ____________________________________________________________
consensus             AACAAAAAAGCAAAACGCTTGTCTCCTTTCGTAATTAGTTGGGAGCTGGGACCATAAGAA
 
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JMSF023O04+           AAGAAANGAAAAAGCTTTTTGTGCGGAGGAGGACGGCGNCGAGTAGTTTGANGCCGCCGC
JMSF022O04+           AAGAAAAGAAAAAGCTTTTTGTGCGGAGGAGGACGGCGGCGAGTAGTTTGAAGCCGCCGC
                      ____________________________________________________________
consensus             AAGAAAAGAAAAAGCTTTTTGTGCGGAGGAGGACGGCGGCGAGTAGTTTGAAGCCGCCGC
 
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JMSF023O04+           TTGGATGGGC                                                  
JMSF022O04+           TTGGATGGGCGGCGACTTGACGGAGGTGGAAATGGAAGGATGAAATGCAGCAAACTGGCC
                      ____________________________________________________________
consensus             TTGGATGGGCGGCGACTTGACGGAGGTGGAAATGGAAGGATGAAATGCAGCAAACTGGCC