Contig 005080:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005E12Sequence344005080 (4)256014950ref|XP_006354176.1|1e-38PREDICTED: E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Solanum tuberosu
JMSF022I08Sequence601005080 (4)emb|CDP15104.1|2e-25unnamed protein product [Coffea canephora]772010093 (4)ref|XP_006360961.1|9e-87PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Solanum tube
JMSF031F22Sequence526005080 (4)emb|CDP15104.1|2e-27unnamed protein product [Coffea canephora]695010093 (4)ref|XP_006360961.1|5e-64PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Solanum tube
JMSF048J02Sequence674005080 (4)ref|XP_009794482.1|3e-63PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Nicotiana sylvest714010093 (4)ref|XP_006360961.1|1e-68PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Solanum tube

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048J02+ TTCA
                      ____________________________________________________________
consensus TTCA
 
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JMSF048J02+ GGATTGTCGACAGCAAGTGCAACACTTTCAGAATGGTTGTATATTTGCAAAAGCTCTTCA
                      ____________________________________________________________
consensus GGATTGTCGACAGCAAGTGCAACACTTTCAGAATGGTTGTATATTTGCAAAAGCTCTTCA
 
. : . : . : . : . : . :
JMSF048J02+ ACTGATGACCTTGAACCCCTCACCACATTGATTGCTCCAGTGGTCATTATACCTTGATCT
                      ____________________________________________________________
consensus ACTGATGACCTTGAACCCCTCACCACATTGATTGCTCCAGTGGTCATTATACCTTGATCT
 
. : . : . : . : . : . :
JMSF048J02+ GCAACTAGCCATCGACATGAATTGTCTGCAAAAAGTGCAATCTTTACATCTGGTTTTAAA
JMSF031F22+ ATCTGGTTTTAAA
JMSF022I08+ A
                      ____________________________________________________________
consensus GCAACTAGCCATCGACATGAATTGTCTGCAAAAAGTGCAATCTTTACATCTGGTTTTAAA
 
. : . : . : . : . : . :
JMSF048J02+ CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
JMSF031F22+ CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
JMSF022I08+ CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
                      ____________________________________________________________
consensus CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
 
. : . : . : . : . : . :
JMSF048J02+ AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
JMSF031F22+ AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
JMSF022I08+ AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
                      ____________________________________________________________
consensus AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
 
. : . : . : . : . : . :
JMSF048J02+ GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
JMSF031F22+ GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
JMSF022I08+ GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
                      ____________________________________________________________
consensus GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
 
. : . : . : . : . : . :
JMSF048J02+ GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
JMSF031F22+ GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
JMSF022I08+ GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
                      ____________________________________________________________
consensus GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
 
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JMSF048J02+ CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
JMSF031F22+ CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
JMSF005E12+ TCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
JMSF022I08+ CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
                      ____________________________________________________________
consensus CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
 
. : . : . : . : . : . :
JMSF048J02+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
JMSF031F22+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
JMSF005E12+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
JMSF022I08+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
                      ____________________________________________________________
consensus ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
 
. : . : . : . : . : . :
JMSF048J02+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
JMSF031F22+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
JMSF005E12+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
JMSF022I08+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
                      ____________________________________________________________
consensus AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
 
. : . : . : . : . : . :
JMSF048J02+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
JMSF031F22+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
JMSF005E12+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
JMSF022I08+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
                      ____________________________________________________________
consensus ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
 
. : . : . : . : . : . :
JMSF048J02+ ATTAATGAT
JMSF031F22+ ATTAATGATAATAGAATTCGAGAAAACTGGAC
JMSF005E12+ ATTAATGATAATAGAATTCGAGAAAACTGGACGGGGCTAGCGAGAAGAACAAAGAGAAGT
JMSF022I08+ ATTAATGATAATAGAATTCGAGAAAACTGGACGGGGCTAGCGAGAAGAACAAAGAGAAGT
                      ____________________________________________________________
consensus ATTAATGATAATAGAATTCGAGAAAACTGGACGGGGCTAGCGAGAAGAACAAAGAGAAGT
 
. : . : . : . : . : . :
JMSF005E12+ AGAGGTAGAGGGAGAATGCAATTGGAGATGAGTATTGCGTAGTAGGTTGGGAATAGTTTC
JMSF022I08+ AGAGGTAGAGGGAGAATGCAATTGGAGATGAGTATTGCGTAGTAGGTTGGGAATAGTTTC
                      ____________________________________________________________
consensus AGAGGTAGAGGGAGAATGCAATTGGAGATGAGTATTGCGTAGTAGGTTGGGAATAGTTTC