| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005E12 | Sequence | 344 | 005080 (4) | 256 | 014950 | ref|XP_006354176.1| | 1e-38 | PREDICTED: E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Solanum tuberosu | |||
| JMSF022I08 | Sequence | 601 | 005080 (4) | emb|CDP15104.1| | 2e-25 | unnamed protein product [Coffea canephora] | 772 | 010093 (4) | ref|XP_006360961.1| | 9e-87 | PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Solanum tube |
| JMSF031F22 | Sequence | 526 | 005080 (4) | emb|CDP15104.1| | 2e-27 | unnamed protein product [Coffea canephora] | 695 | 010093 (4) | ref|XP_006360961.1| | 5e-64 | PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Solanum tube |
| JMSF048J02 | Sequence | 674 | 005080 (4) | ref|XP_009794482.1| | 3e-63 | PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Nicotiana sylvest | 714 | 010093 (4) | ref|XP_006360961.1| | 1e-68 | PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Solanum tube |
This contig is upended
. : . : . : . : . : . :
JMSF048J02+ TTCA
____________________________________________________________
consensus TTCA
. : . : . : . : . : . :
JMSF048J02+ GGATTGTCGACAGCAAGTGCAACACTTTCAGAATGGTTGTATATTTGCAAAAGCTCTTCA
____________________________________________________________
consensus GGATTGTCGACAGCAAGTGCAACACTTTCAGAATGGTTGTATATTTGCAAAAGCTCTTCA
. : . : . : . : . : . :
JMSF048J02+ ACTGATGACCTTGAACCCCTCACCACATTGATTGCTCCAGTGGTCATTATACCTTGATCT
____________________________________________________________
consensus ACTGATGACCTTGAACCCCTCACCACATTGATTGCTCCAGTGGTCATTATACCTTGATCT
. : . : . : . : . : . :
JMSF048J02+ GCAACTAGCCATCGACATGAATTGTCTGCAAAAAGTGCAATCTTTACATCTGGTTTTAAA
JMSF031F22+ ATCTGGTTTTAAA
JMSF022I08+ A
____________________________________________________________
consensus GCAACTAGCCATCGACATGAATTGTCTGCAAAAAGTGCAATCTTTACATCTGGTTTTAAA
. : . : . : . : . : . :
JMSF048J02+ CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
JMSF031F22+ CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
JMSF022I08+ CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
____________________________________________________________
consensus CCAATAACTCTAAGACCTTCAGCAAAGCTCACAATTTCCTTCTCAAGCTCCTTAAAGCTC
. : . : . : . : . : . :
JMSF048J02+ AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
JMSF031F22+ AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
JMSF022I08+ AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
____________________________________________________________
consensus AGATTTGTTGGAGGGTTGTGGTATGGGTCCACTAATGCTATGCAATTGCCAAACTCCTCT
. : . : . : . : . : . :
JMSF048J02+ GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
JMSF031F22+ GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
JMSF022I08+ GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
____________________________________________________________
consensus GCTGCTGTCTTCCAAATATCAGGAACTGTTTTCCATTCTGATGACAATAATCCATTCCCT
. : . : . : . : . : . :
JMSF048J02+ GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
JMSF031F22+ GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
JMSF022I08+ GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
____________________________________________________________
consensus GACAACAATATGCTCTCCAAAATAGGTGAGCACTTCCTAATTTGCATTCCTGTTGACTCG
. : . : . : . : . : . :
JMSF048J02+ CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
JMSF031F22+ CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
JMSF005E12+ TCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
JMSF022I08+ CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
____________________________________________________________
consensus CAGAAAACCCTGAATTTCCGACTTGTCGAACCCCTAGAATTTAGCTGCCACTTCATTTTG
. : . : . : . : . : . :
JMSF048J02+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
JMSF031F22+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
JMSF005E12+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
JMSF022I08+ ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
____________________________________________________________
consensus ATGAATCCTCGGCAAGACATGAGATCATGAACGGCATGGTTCCCGTCATCGGACTTGGGA
. : . : . : . : . : . :
JMSF048J02+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
JMSF031F22+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
JMSF005E12+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
JMSF022I08+ AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
____________________________________________________________
consensus AGAAGAAACATTACCGATTTAGTGTTCAATGCCGCCATCTTTATCTCTACGTATGCACAT
. : . : . : . : . : . :
JMSF048J02+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
JMSF031F22+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
JMSF005E12+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
JMSF022I08+ ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
____________________________________________________________
consensus ACAGAGAGGGTTGAGAGAGACAGACAAGGAAGGGAAGAAAAGTGATCGAGAAAGGAAAAG
. : . : . : . : . : . :
JMSF048J02+ ATTAATGAT
JMSF031F22+ ATTAATGATAATAGAATTCGAGAAAACTGGAC
JMSF005E12+ ATTAATGATAATAGAATTCGAGAAAACTGGACGGGGCTAGCGAGAAGAACAAAGAGAAGT
JMSF022I08+ ATTAATGATAATAGAATTCGAGAAAACTGGACGGGGCTAGCGAGAAGAACAAAGAGAAGT
____________________________________________________________
consensus ATTAATGATAATAGAATTCGAGAAAACTGGACGGGGCTAGCGAGAAGAACAAAGAGAAGT
. : . : . : . : . : . :
JMSF005E12+ AGAGGTAGAGGGAGAATGCAATTGGAGATGAGTATTGCGTAGTAGGTTGGGAATAGTTTC
JMSF022I08+ AGAGGTAGAGGGAGAATGCAATTGGAGATGAGTATTGCGTAGTAGGTTGGGAATAGTTTC
____________________________________________________________
consensus AGAGGTAGAGGGAGAATGCAATTGGAGATGAGTATTGCGTAGTAGGTTGGGAATAGTTTC