| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009P08 | Sequence | 140 | 005079 (5) | 745 | 012512 (4) | ref|XP_002299170.1| | 2e-84 | DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp | |||
| JMFF015L18 | Sequence | 568 | 005079 (5) | ref|XP_006347682.1| | 3e-28 | PREDICTED: dnaJ homolog subfamily C member 2-like [Solanum tuberosum] | 660 | 012512 (4) | gb|KJB67816.1| | 4e-80 | hypothetical protein B456_010G212600 [Gossypium raimondii] |
| JMFF041M05 | Sequence | 630 | 005079 (5) | ref|XP_006347682.1| | 2e-23 | PREDICTED: dnaJ homolog subfamily C member 2-like [Solanum tuberosum] | |||||
| JMSF005F12 | Sequence | 345 | 005079 (5) | 274 | 000112 (13) | ||||||
| JMSF022H10 | Sequence | 666 | 005079 (5) | ref|XP_009780057.1| | 2e-28 | PREDICTED: dnaJ homolog subfamily C member 2-like [Nicotiana sylvestris] | 794 | 012512 (4) | ref|XP_002299170.1| | 9e-66 | DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp |
This contig is upended
. : . : . : . : . : . :
JMFF015L18+ TCAGTA
JMSF022H10+ TCAGTA
____________________________________________________________
consensus TCAGTA
. : . : . : . : . : . :
JMFF015L18+ GCAAGATATCTCAAATGGCTCAGCCCCAGCAATGCATAATGATCCTGCTCCTTTGCCTCA
JMFF041M05+ CAGCCCCAGCAATGCATAATGATCCTGCTCCTTTGCCTCA
JMSF022H10+ GCAAGATATCTCAAATGGCTCAGCCCCAGCAATGCATAATGATCCTGCTCCTTTGCCTCA
____________________________________________________________
consensus GCAAGATATCTCAAATGGCTCAGCCCCAGCAATGCATAATGATCCTGCTCCTTTGCCTCA
. : . : . : . : . : . :
JMFF015L18+ GCAGAAGATTTCTTTTTACTCTTACTACTATATGATTCAGAAGAATAGAAGTTAGACTCC
JMFF041M05+ GCAGGAGATTTCTTTTTACTCTTACTACTATATGATTCAGAAGAATAGAAGTTAGACTCC
JMSF022H10+ GCAGAAGATTTCTTTTTACTCTTACTACTATATGATTCAGAAGAATAGAAGTTAGACTCC
____________________________________________________________
consensus GCAGAAGATTTCTTTTTACTCTTACTACTATATGATTCAGAAGAATAGAAGTTAGACTCC
. : . : . : . : . : . :
JMFF015L18+ TCCTTGTCCGTAGGCACATCCTGATTACTATCTTCAATGTTTTCCTCCTCAAAACAGCCA
JMFF041M05+ TCCTTGTCCGTAGGCACATCCTGATTACTATCTTCAATGTTTTCCTCCTCAAAACAGCCA
JMSF022H10+ TCCTTGTCCGTAGGCACATCCTGATTACTATCTTCAATGTTTTCCTCCTCAAAACAGCCA
____________________________________________________________
consensus TCCTTGTCCGTAGGCACATCCTGATTACTATCTTCAATGTTTTCCTCCTCAAAACAGCCA
. : . : . : . : . : . :
JMFF015L18+ ATCAGCCTGAGTGCAGCAGAGTGAAAAGAATGCCCCGCAGGCTCAAATCTGCCAGCTTTA
JMFF041M05+ ATCAGCCTGAGTGCAGCAGAGTGAAAAGAATGCCCCGCAGGCTCAAATCTGCCAGCTTTA
JMSF022H10+ ATCAGCCTGAGTGCAGCAGAGTGAAAAGAATGCCCCGCAGGCTCAAATCTGCCAGCTTTA
____________________________________________________________
consensus ATCAGCCTGAGTGCAGCAGAGTGAAAAGAATGCCCCGCAGGCTCAAATCTGCCAGCTTTA
. : . : . : . : . : . :
JMFF015L18+ ATGGGAAGGCAGTTTGAGGAAACAAAGATTGGTTCACCATTTACAATTTCTTTCTCATAG
JMSF005F12+ TCATAG
JMFF041M05+ ATGGGAAGGCAGTTTGAGGAAACAAAGATTGGTTCACCATTTACAATTTCTTTCTCATAG
JMSF022H10+ ATGGGAAGGCAGTTTGAGGAAACAAAGATTGGTTCACCATTTACAATTTCTTTCTCATAG
____________________________________________________________
consensus ATGGGAAGGCAGTTTGAGGAAACAAAGATTGGTTCACCATTTACAATTTCTTTCTCATAG
. : . : . : . : . : . :
JMFF015L18+ GAAATCAGACGCAAAGTATCCCTAATAGCCATTAAGTTTCAATGAAGGAGACACAAGCCC
JMSF005F12+ GAAATCAGACGCAAAGTATCCCTAATAGCCATTAAGTTTCAATGAAGGAGACACAAGCCC
JMFF041M05+ GAAATCAGACGCAAAGTATCCCTAATAGCCATTAAGTTTCAATGAAGGAGACACAAGCCC
JMSF022H10+ GAAATCAGACGCAAAGTATCCCTAATAGCCATTAAGTTTCAATGAAGGAGACACAAGCCC
____________________________________________________________
consensus GAAATCAGACGCAAAGTATCCCTAATAGCCATTAAGTTTCAATGAAGGAGACACAAGCCC
. : . : . : . : . : . :
JMFF015L18+ TCAAACTCTTCTGGAAGATAAGTGCCAATAAACCCAGCAACAGCTTAAACTTGACTGAGA
JMSF005F12+ TCAAACTCTTCTGGAAGATAAGTGCCAATAAACCCAGCAACAGCTTAAACTTGACTGAGA
JMFF041M05+ TCAAACTCTTCTGGAAGATAAGTGCCAATAAACCCAGCAACAGCTTAAACTTGACTGAGA
JMSF022H10+ TCAAACTCTTCTGGAAGATAAGTGCCAATAAACCCAGCAACAGCTTAAACTTGACTGAGA
____________________________________________________________
consensus TCAAACTCTTCTGGAAGATAAGTGCCAATAAACCCAGCAACAGCTTAAACTTGACTGAGA
. : . : . : . : . : . :
JMFF015L18+ CTTCAAAAAGCAGACTCAGCAAATCCCAGTCTCTCCTTTCACCATCAAATTAGGCTTTGA
JMSF005F12+ CTTC--AAAGCAGACTCAGCAAATCCCAGTCTCTCCTTTCACCATCAAATTAGGCTTTGA
JMFF009P08+ TCAAAAAGCAGACTCAGCAAATCCCAGTCTCTCCTTTCACCATCAAATTAGGCTTTGA
JMFF041M05+ CTTCAAAAAGCAGACTCAGCAAATCCCAGTCTCTCCTTTCACCATCAAATTAGGCTTTGA
JMSF022H10+ CTTCAAAAAGCAGACTCAGCAAATCCCAGTCTCTCCTTTCACCATCAAATTAGGCTTTGA
____________________________________________________________
consensus CTTCAAAAAGCAGACTCAGCAAATCCCAGTCTCTCCTTTCACCATCAAATTAGGCTTTGA
. : . : . : . : . : . :
JMFF015L18+ ATCTAATTGCCGATCCTCCCGTCAGCGTTGAGCAAGGAGGAAGACGGTGGCTCCGTTGTC
JMSF005F12+ ATCTAATTGCCGATCCTCCCGTCAGCGTTGAGCAAGGAGGAAGACGGTGGCTCCGTTGTC
JMFF009P08+ ATNTAATTGCCGATCCTCCCGTCAGCGTTGAGCAAGGAGGAAGACGGTGGCTCCGTTGTC
JMFF041M05+ ATCTAATTGCCGATCCTCCCGTCAGCGTTGAGCAAGGAGGAAGACGGTGGCTCCGTTGTC
JMSF022H10+ ATCTAATTGCCGATCCTCCCGTCAGCGTTGAGCAAGGAGGAAGACGGTGGCTCCGTTGTC
____________________________________________________________
consensus ATCTAATTGCCGATCCTCCCGTCAGCGTTGAGCAAGGAGGAAGACGGTGGCTCCGTTGTC
. : . : . : . : . : . :
JMFF015L18+ TGATCCGAGAGAGTTGCGGCCG
JMSF005F12+ TGATCCGAGAGAGTTGCGGCCGCAGAAAGTGCGGTGCTAGCTTGCTAGGGTTTTTATTCA
JMFF009P08+ TGATCCGAGAGAGTTGCGGCC
JMFF041M05+ TGATCCGAGAGAGTTGCGGCCGCAGAAAGTGCGGTGCTAGCTTGCTAGGGTTTTTATTCA
JMSF022H10+ TGATCCGAGAGAGTTGCGGCCGCAGAAAGTGCGGTGCTAGCTTGCTAGGGTTTTTATTCA
____________________________________________________________
consensus TGATCCGAGAGAGTTGCGGCCGCAGAAAGTGCGGTGCTAGCTTGCTAGGGTTTTTATTCA
. : . : . : . : . : . :
JMSF005F12+ GCAGTACGTAAGTCAGGAGGGAATGAAAACCAAAGTGCG
JMFF041M05+ GCAGTACGTAAGTCAGGAGGGAATGAAAACCAAAGTGCGCAAGAAAAGAA
JMSF022H10+ GCAGTACGTAAGTCAGGAGGGAATGAAAACCAAAGTGCGCAAGAAAAGAAGGATTTGGCC
____________________________________________________________
consensus GCAGTACGTAAGTCAGGAGGGAATGAAAACCAAAGTGCGCAAGAAAAGAAGGATTTGGCC