Contig 005077:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF022E17+                                                         GCGCCTCTGTCTT
JMSF022E17-                                                          GCGCCTCTGTCTT
                      ____________________________________________________________
consensus                                                            GCGCCTCTGTCTT
 
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rJMSF022E17+          CTCCTATGCGCCTAGTCGCTCCCTCGCCCGCCAGACACCGTCGCTAGTCGCCACCGCCTC
JMSF022E17-           CTCCTATGCGCCTAGTCGCTCCCTCGCCCGCCAGACACCGTCGCTAGTCGCCACCGCCTC
                      ____________________________________________________________
consensus             CTCCTATGCGCCTAGTCGCTCCCTCGCCCGCCAGACACCGTCGCTAGTCGCCACCGCCTC
 
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rJMSF022E17+          GCCGGCTTCATCTTCAAGTTTCAACCGTGGTCGCCAGCTGCCCAGATCCGTCTTCAACCG
JMSF022E17-           GCCGGCTTCATCTTCAAGTTTCAACCGTGGTCGCCAGCTGCCCAGATCCGTCTTCAACCG
                      ____________________________________________________________
consensus             GCCGGCTTCATCTTCAAGTTTCAACCGTGGTCGCCAGCTGCCCAGATCCGTCTTCAACCG
 
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rJMSF022E17+          TGAACAGTCGCTCGCCGGTTCCGTCTTCACTCTCAGGCCTTAGGTGCGTAGTTCCTCGAT
JMSF022E17-           TGAACAGTCGCTCGCCGGTTCCGTCTTCACTCTCAGGCCTTAGGTGCGTAGTTCCTCGAT
                      ____________________________________________________________
consensus             TGAACAGTCGCTCGCCGGTTCCGTCTTCACTCTCAGGCCTTAGGTGCGTAGTTCCTCGAT
 
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rJMSF022E17+          TCCGTTGCCCTTTTGAACTTCTTCAGCAAATCTTATTATGTTTTTGCCCTAATTTTTTTA
JMSF022E17-           TCCGTTGCCCTTTTGAACTTCTTCAGCAAATCTTATTATGTTTTTGCCCTAATTTTTTTA
                      ____________________________________________________________
consensus             TCCGTTGCCCTTTTGAACTTCTTCAGCAAATCTTATTATGTTTTTGCCCTAATTTTTTTA
 
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rJMSF022E17+          ATTATTTTTTTTTGTTGCTAATTTTGCCCTAATTACTTGGATCGTTCTGTAATTGAATAT
JMSF022E17-           ATTATTTTTTTTTGTTGCTAATTTTGCCCTAATTACTTGGATCGTTCTGTAATTGAATAT
                      ____________________________________________________________
consensus             ATTATTTTTTTTTGTTGCTAATTTTGCCCTAATTACTTGGATCGTTCTGTAATTGAATAT
 
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rJMSF022E17+          CCAGCAGTAATCATATGCAGCTGAAGAGGTTAATTAATCTTAAGCCATCCCAGATTGGCA
JMSF022E17-           CCAGCAGTAATCATATGCAGCTGAAGAGGTTAATTAATCTTAAGCCATCCCAGATTGGCA
                      ____________________________________________________________
consensus             CCAGCAGTAATCATATGCAGCTGAAGAGGTTAATTAATCTTAAGCCATCCCAGATTGGCA
 
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rJMSF022E17+          CAAAATTGAATTGTTTGGATTATTGAGCCAAAAATGCACCAAATGTATGGGCAAAGATAA
JMSF022E17-           CAAAATTGAATTGTTTGGATTATTGAGCCAAAAATGCACCAAATGTATGGGCAAAGATAA
                      ____________________________________________________________
consensus             CAAAATTGAATTGTTTGGATTATTGAGCCAAAAATGCACCAAATGTATGGGCAAAGATAA
 
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rJMSF022E17+          CAACACGTAAATATTACTAAGTAGAAACCCACAAATATGTTTAACACTGTAACTGATGGC
JMSF022E17-           CAACACGTAAATATTACTAAGTAGAAACCCACAAATATGTTTAACACTGTAACTGATGGC
                      ____________________________________________________________
consensus             CAACACGTAAATATTACTAAGTAGAAACCCACAAATATGTTTAACACTGTAACTGATGGC
 
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rJMSF022E17+          TTATAGGCATTATTGCAGTACATTAGTATATACATGTCTACTTTTGATTAATGAGTATTT
JMSF022E17-           TTATAGGCATTATTGCAGTACATTAGTATATACATGTCTACTTTTGATTAATGAGTATTT
                      ____________________________________________________________
consensus             TTATAGGCATTATTGCAGTACATTAGTATATACATGTCTACTTTTGATTAATGAGTATTT
 
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rJMSF022E17+          CAATTTCCAAATATTTTGTTCTGGAGAAGCATTGGAGCTCT                   
JMSF022E17-           CAATTTCCAAATATTTTGTTCTGGAGAAGCATTGGAGCTCTTGATACTTGTGATGAAATA
                      ____________________________________________________________
consensus             CAATTTCCAAATATTTTGTTCTGGAGAAGCATTGGAGCTCTTGATACTTGTGATGAAATA