Contig 005075:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050B06Sequence634005075 (2)ref|XP_006384514.1|2e-95hypothetical protein POPTR_0004s16510g [Populus trichocarpa] gb|ERP62311.1| hypo557001237 (3)ref|XP_006411719.1|3e-21hypothetical protein EUTSA_v10024693mg [Eutrema salsugineum] gb|ESQ53172.1| hypo
JMSF022C09Sequence664005075 (2)ref|XP_006384514.1|2e-101hypothetical protein POPTR_0004s16510g [Populus trichocarpa] gb|ERP62311.1| hypo743001237 (3)emb|CDP20068.1|1e-56unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF022C09+                                                                   TAGG
                      ____________________________________________________________
consensus                                                                     TAGG
 
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JMFF050B06+                                 ATATATATAGGTCTTCCCTCCTTGTCAACGCCATGGTA
JMSF022C09+           ATCAACTTTCCCGAGCCTTTCAATATATATAGGTCTTCCCTCCTTGTCAACGCCATGGTA
                      ____________________________________________________________
consensus             ATCAACTTTCCCGAGCCTTTCAATATATATAGGTCTTCCCTCCTTGTCAACGCCATGGTA
 
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JMFF050B06+           ACCATGTGGGTAATAGTTCAAAACTTCATCTAACTCTTCAAACTCAAACTCCTGCATAAT
JMSF022C09+           ACCATGTGGGTAATAGTTCAAAACTTCATCTAACTCTTCAAACTCAAACTCCTGCATAAT
                      ____________________________________________________________
consensus             ACCATGTGGGTAATAGTTCAAAACTTCATCTAACTCTTCAAACTCAAACTCCTGCATAAT
 
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JMFF050B06+           GTTATCAGCACCAAATTCCTTCCTCCACTGGATCATATCAGCCCACATGTTCTTTGCTTT
JMSF022C09+           GTTATCAGCACCAAATTCCTTCCTCCACTGGATCATATCAGCCCACATGTTCTTTGCTTT
                      ____________________________________________________________
consensus             GTTATCAGCACCAAATTCCTTCCTCCACTGGATCATATCAGCCCACATGTTCTTTGCTTT
 
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JMFF050B06+           CTCGATGTCAAATTTCCTCGCTCTCAAAAACCTCAACATCAAGTAATAATCATCATGGCG
JMSF022C09+           CTCGATGTCAAATTTCCTCGCTCTCAAAAACCTCAACATCAAGTAATAATCATCATGGCG
                      ____________________________________________________________
consensus             CTCGATGTCAAATTTCCTCGCTCTCAAAAACCTCAACATCAAGTAATAATCATCATGGCG
 
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JMFF050B06+           TTCCACTAATAGTTCATCCAAAATCAATTCTTGCCTAAATTCATCGACTGCCTGTAGCTC
JMSF022C09+           TTCCACTAATAGTTCATCCAAAATCAATTCTTGCCTAAATTCATCGACTGCCTGTAGCTC
                      ____________________________________________________________
consensus             TTCCACTAATAGTTCATCCAAAATCAATTCTTGCCTAAATTCATCGACTGCCTGTAGCTC
 
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JMFF050B06+           CTCAACATCCCGAATATCCTCAATGGAGACAGAGCTGGATCGCCCCCCATTCTTTGTTCT
JMSF022C09+           CTCAACATCCCGAATATCCTCAATGGAGACAGAGCTGGATCGCCCCCCATTCTTTGTTCT
                      ____________________________________________________________
consensus             CTCAACATCCCGAATATCCTCAATGGAGACAGAGCTGGATCGCCCCCCATTCTTTGTTCT
 
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JMFF050B06+           ATTGCTTTTCTTCTTGAGTGAGTGCTTGAATCTCGAGGATGCACTAAGGGCTTTCTTCTT
JMSF022C09+           ATTGCTTTTCTTCTTGAGTGAGTGCTTGAATCTCGAGGATGCACTAAGGGCTTTCTTCTT
                      ____________________________________________________________
consensus             ATTGCTTTTCTTCTTGAGTGAGTGCTTGAATCTCGAGGATGCACTAAGGGCTTTCTTCTT
 
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JMFF050B06+           TAGAGCACCAATTTTTGTCTTTCTCTCGTCCTCCGAGATATCAAAATCAGATTTCCTTTC
JMSF022C09+           TAGAGCACCAATTTTTGTCTTTCTCTCGTCCTCCGAGATATCAAAATCAGATTTCCTTTC
                      ____________________________________________________________
consensus             TAGAGCACCAATTTTTGTCTTTCTCTCGTCCTCCGAGATATCAAAATCAGATTTCCTTTC
 
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JMFF050B06+           CCTTCTCTCGTCATTGGCCGAGGAACCTTCAAAGCATGGCCTAGCGAAGAAATCAAGAGG
JMSF022C09+           CCTTCTCTCGTCATTGGCCGAGGAACCTTCAAAGCATGGCCTAGCGAAGAAATCAAGAGG
                      ____________________________________________________________
consensus             CCTTCTCTCGTCATTGGCCGAGGAACCTTCAAAGCATGGCCTAGCGAAGAAATCAAGAGG
 
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JMFF050B06+           TCCCGACATGTTTTCCGTCGATCACAAGAAACACGCGCACACTGTAGAAATAAGAATCAA
JMSF022C09+           TCCCGACATGTTTTCCGTCGATCACAAGAAACACGCGCACACTGTAGAAATAAGAATCAA
                      ____________________________________________________________
consensus             TCCCGACATGTTTTCCGTCGATCACAAGAAACACGCGCACACTGTAGAAATAAGAATCAA
 
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JMFF050B06+           ATAATCGCGAGGAGAGGAGAGGAGCAGAGGGAGAAGGAGAAAAGCGAGAGATAGTC    
JMSF022C09+           ATAATCGCGAGGAGAGGAGAGGAGCAGAGGGAGAAGGAGAAAAGCGAGAGATAGTCAGCC
                      ____________________________________________________________
consensus             ATAATCGCGAGGAGAGGAGAGGAGCAGAGGGAGAAGGAGAAAAGCGAGAGATAGTCAGCC