| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001C07 | Sequence | 220 | 005073 (4) | ref|XP_006344572.1| | 94.4 | PREDICTED: uncharacterized protein LOC102592314 [Solanum tuberosum] | 771 | 021347 | ref|XP_006372225.1| | 6e-14 | tRNA pseudouridine synthase family protein [Populus trichocarpa] gb|ERP50022.1| |
| JMSF021P18 | Sequence | 651 | 005073 (4) | ref|XP_009763656.1| | 6e-96 | PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri | 788 | 014050 (3) | ref|XP_004242889.1| | 214 | PREDICTED: uncharacterized protein LOC101257579 [Solanum lycopersicum] |
| JMSF028E08 | Sequence | 619 | 005073 (4) | ref|XP_009763656.1| | 2e-93 | PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri | 692 | 014050 (3) | ref|XP_006372225.1| | 4e-14 | tRNA pseudouridine synthase family protein [Populus trichocarpa] gb|ERP50022.1| |
| JMSF038H09 | Sequence | 658 | 005073 (4) | ref|XP_009763656.1| | 4e-99 | PREDICTED: uncharacterized protein LOC104215532 isoform X4 [Nicotiana sylvestri | 894 | 014050 (3) | ref|XP_004242889.1| | 224 | PREDICTED: uncharacterized protein LOC101257579 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF038H09+ TGCTATGCTATTTAT
____________________________________________________________
consensus TGCTATGCTATTTAT
. : . : . : . : . : . :
JMSF028E08+ CCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
JMSF038H09+ AGCATCTGCAATATCTTGAACCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
JMSF021P18+ AATATCTTGAACCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
____________________________________________________________
consensus AGCATCTGCAATATCTTGAACCTTGACATCCTTTCTCCAAGTATAGAAAGAACAGACTTG
. : . : . : . : . : . :
JMSF028E08+ TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
JMSF038H09+ TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
JMSF021P18+ TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
____________________________________________________________
consensus TTGAGAAGCTGAAACACCCTTATCAGTGCGCCCAGCAACTACAGCACAACCTTCTAATGG
. : . : . : . : . : . :
JMSF028E08+ TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
JMSF038H09+ TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
JMSF021P18+ TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
____________________________________________________________
consensus TAAGTTCTTATCCTTTAGTTGTTGAGCTTTTTTCTCATCAACAAATTGTCCAAGAGCTCT
. : . : . : . : . : . :
JMSF028E08+ TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
JMSF038H09+ TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
JMSF021P18+ TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
____________________________________________________________
consensus TTCGACCAACTCCTGAACTGTAGTCAGACCAGGCTGCTTCTGCCAGCCACCAAAGGAGGC
. : . : . : . : . : . :
JMSF028E08+ CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
JMSF038H09+ CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
JMSF021P18+ CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
____________________________________________________________
consensus CCCATGATATGATAGGACTATCTTAAACGTCACTCTTGCCCATCTCCCTGTCCTATCTTC
. : . : . : . : . : . :
JMSF028E08+ AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
JMSF038H09+ AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
JMSF021P18+ AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
____________________________________________________________
consensus AACTGGAAAACTACCTAACTCCGATTTCACAAAATCTTCTATAGCTTCGGCATCATCTTG
. : . : . : . : . : . :
JMSF028E08+ AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
JMSF038H09+ AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
JMSF021P18+ AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
____________________________________________________________
consensus AATAGGATGCGACAGTGGTGGAACCTCTTTTTGAAACAATCCTGCCAAATTTGACTGGCC
. : . : . : . : . : . :
JMSF028E08+ TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
JMSF038H09+ TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
JMSF001C07+ TTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
JMSF021P18+ TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
____________________________________________________________
consensus TTTCACCATTTCTGTATAAAAATCAACAATTTTTTGCCATGGCCTAGCAGACATGAACTG
. : . : . : . : . : . :
JMSF028E08+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
JMSF038H09+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
JMSF001C07+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
JMSF021P18+ GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
____________________________________________________________
consensus GTAACATTCCTTGGAAGTCCATCTGGAGAATTTGCAGGAATCAGTGTGGTTGTAGTGATA
. : . : . : . : . : . :
JMSF028E08+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
JMSF038H09+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
JMSF001C07+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
JMSF021P18+ AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
____________________________________________________________
consensus AACCTTCTTAGGAGCCGCTTGCTGACTTTCCATAATGTTTTTTATGGTCCGCACCACCGT
. : . : . : . : . : . :
JMSF028E08+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTC
JMSF038H09+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTC
JMSF001C07+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTCTGCCC
JMSF021P18+ CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTCTGCCCGAAATGGTATTGTCAGCC
____________________________________________________________
consensus CGGAGAGTTTATCATGACCACTGCCGCCGTTCGTCTCTGCCCGAAATGGTATTGTCAGCC