Contig 005072:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF040G02+                                                                   TCCG
JMSF050H04+                                           TCGATCCAACAAGTCCTCACAAACTCCG
                      ____________________________________________________________
consensus                                             TCGATCCAACAAGTCCTCACAAACTCCG
 
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JMSF040G02+           AGACTGTTGTTAATCAAATGCAGATCCATAACACTTGGACCATCATCATTTAAAACTCCC
JMSF050H04+           AGACTGTTGTTAATCAAATGCAGATCCATAACACTTGGACCATCATCATTTAAAACTCCC
                      ____________________________________________________________
consensus             AGACTGTTGTTAATCAAATGCAGATCCATAACACTTGGACCATCATCATTTAAAACTCCC
 
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JMSF040G02+           GTGAGCCCGTTTTGATTCACTGAAGTTTGGCTAATTCTCAGGTTTTCGATCAGAACGGGA
JMSF050H04+           GTGAGCCCGTTTTGATTCACTGAAGTTTGGCTAATTCTCAGGTTTTCGATCAGAACGGGA
                      ____________________________________________________________
consensus             GTGAGCCCGTTTTGATTCACTGAAGTTTGGCTAATTCTCAGGTTTTCGATCAGAACGGGA
 
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JMSF040G02+           TCCAGAAAATCCGATACAGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
JMSF050H04+           TCCAGAAAATCCGATACAGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
JMFS122G09+                            AGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
                      ____________________________________________________________
consensus             TCCAGAAAATCCGATACAGCCTGACCATTTAAATTTTCAGCGAGTTCGTTTCGATCCAAA
 
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JMSF040G02+           CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
JMSF050H04+           CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
JMFS122G09+           CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
                      ____________________________________________________________
consensus             CAGGTTTGGCTAACATTCAGACTACCAACCAAAATTGGATCTGGAAAACTTTGCTCAACT
 
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JMSF040G02+           CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
JMSF050H04+           CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
JMFS122G09+           CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
JMSF021N20+                                                          ACCATATAAATTT
                      ____________________________________________________________
consensus             CTCGAGTTTTCAATCAAAACTGGGTCTGAAAACTTCGATATGCTTTCACCATATAAATTT
 
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JMSF040G02+           TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
JMSF050H04+           TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
JMFS122G09+           TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
JMSF021N20+           TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
                      ____________________________________________________________
consensus             TCAATACATCGGTTTTGATCAATAACAGTAGGGTCCAGAAAATTTGGCAGGCCTTCATCA
 
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JMSF040G02+           CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
JMSF050H04+           CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
JMFS122G09+           CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
JMSF021N20+           CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
                      ____________________________________________________________
consensus             CATAGGCTCGAGGTTATTCCATTCAAGTCTGCGAGGGTTTCACTAATGTTCAAGCAATTA
 
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JMSF040G02+           AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
JMSF050H04+           AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
JMFS122G09+           AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
JMSF021N20+           AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
                      ____________________________________________________________
consensus             AACAAATTTGGATCCAGGAAAACAGATTGGGTTTTACCCTTCAATTTATCCCCTGAAGCC
 
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JMSF040G02+           TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
JMSF050H04+           TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
JMFS122G09+           TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
JMSF021N20+           TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
                      ____________________________________________________________
consensus             TCACATATCACCCTCACATTTCTTTCCATGACCATCTATTCAATCCTCCAAGAATCAAGA
 
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JMSF040G02+           ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
JMSF050H04+           ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
JMFS122G09+           ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
JMSF021N20+           ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
                      ____________________________________________________________
consensus             ACCCTAAATCTCACCAACATTTAAAAAACAATACTTTTCACTATCCCAGTTTCCCAATCC
 
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JMSF040G02+           T                                                           
JMSF050H04+           T                                                           
JMFS122G09+           T                                                           
JMSF021N20+           TGCAGTTATCATGAAGAGCAGAGATTTTACTGGAGTTCAAATTCTAGATATACCAAATTC
                      ____________________________________________________________
consensus             TGCAGTTATCATGAAGAGCAGAGATTTTACTGGAGTTCAAATTCTAGATATACCAAATTC
 
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JMSF021N20+           AAGAAAATTCAAGAACCCAGTTCATATCCTGGAACATTTGACAATGGAAAAAAAATATAA
                      ____________________________________________________________
consensus             AAGAAAATTCAAGAACCCAGTTCATATCCTGGAACATTTGACAATGGAAAAAAAATATAA
 
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JMSF021N20+           TCTTTAAGCATAAACACACACATTGATACAATCAAAATGGGAAAAACTGAGCATAATTAG
                      ____________________________________________________________
consensus             TCTTTAAGCATAAACACACACATTGATACAATCAAAATGGGAAAAACTGAGCATAATTAG
 
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JMSF021N20+           AAATGCTCAAAATAATAAGCTAAAGCAATATTCTCTAACAGCAAAAGGGAATTAAATAAA
                      ____________________________________________________________
consensus             AAATGCTCAAAATAATAAGCTAAAGCAATATTCTCTAACAGCAAAAGGGAATTAAATAAA
 
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JMSF021N20+           GCAGAAAGATGAAAACTTTATCCACAAAGAACACATGAAAATTGAAGGTACCTTACACAG
                      ____________________________________________________________
consensus             GCAGAAAGATGAAAACTTTATCCACAAAGAACACATGAAAATTGAAGGTACCTTACACAG
 
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JMSF021N20+           AGCAGGCAGGAGAAACACTTGGTTTGAAACTATGGAAATGAAGCTAAGTATGTTTGTGTC
                      ____________________________________________________________
consensus             AGCAGGCAGGAGAAACACTTGGTTTGAAACTATGGAAATGAAGCTAAGTATGTTTGTGTC