Contig 005070:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021H21Sequence665005070 (2)ref|XP_009598906.1|2e-55PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nicotiana t803014095 (2)ref|XP_009598909.1|3e-88PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X3 [Nicotiana t
JMSF044I22Sequence764005070 (2)ref|XP_009598906.1|1e-56PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nicotiana t706014095 (2)ref|XP_009598906.1|5e-75PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nicotiana t

Alignment

This contig is upended


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JMSF044I22+                           CTCCCTCTCGTGTTTGTTCTTTCAATTAAGGATATTGTTACCTT
                      ____________________________________________________________
consensus                             CTCCCTCTCGTGTTTGTTCTTTCAATTAAGGATATTGTTACCTT
 
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JMSF044I22+           AAGAGCATGAAAATTTCAGAACAGTTGTCATGAGAATTTATGTTACCTGTCCCCCAGATG
JMSF021H21+                                                                  AGATG
                      ____________________________________________________________
consensus             AAGAGCATGAAAATTTCAGAACAGTTGTCATGAGAATTTATGTTACCTGTCCCCCAGATG
 
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JMSF044I22+           CCAATAGAGCACCAAATTCCAGTACTTTGTTTAAATCAAAGCTTCCAAATGAAGTGCTTC
JMSF021H21+           CCAATAGAGCACCAAATTCCAGTACTTTGTTTAAATCAAAGCTTCCAAATGAAGTGCTTC
                      ____________________________________________________________
consensus             CCAATAGAGCACCAAATTCCAGTACTTTGTTTAAATCAAAGCTTCCAAATGAAGTGCTTC
 
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JMSF044I22+           CTGCAAGTTTAGGATTACATTTATCCCATGCTACTAAATCTTCAACAGAACCAGAAACCC
JMSF021H21+           CTGCAAGTTTAGGATTACATTTATCCCATGCTACTAAATCTTCAACAGAACCAGAAACCC
                      ____________________________________________________________
consensus             CTGCAAGTTTAGGATTACATTTATCCCATGCTACTAAATCTTCAACAGAACCAGAAACCC
 
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JMSF044I22+           CAGATTCTATCATTTTCTTCTCAACAGAATCACATAAATCAGTCAGAGATGTATGTTTTA
JMSF021H21+           CAGATTCTATCATTTTCTTCTCAACAGAATCACATAAATCAGTCAGAGATGTATGTTTTA
                      ____________________________________________________________
consensus             CAGATTCTATCATTTTCTTCTCAACAGAATCACATAAATCAGTCAGAGATGTATGTTTTA
 
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JMSF044I22+           CATTCTCTGCAATTGCCCCAATGGCATGAGCTGCAGCAACCCTGGTGTCCCACTTTTTGC
JMSF021H21+           CATTCTCTGCAATTGCCCCAATGGCATGAGCTGCAGCAACCCTGGTGTCCCACTTTTTGC
                      ____________________________________________________________
consensus             CATTCTCTGCAATTGCCCCAATGGCATGAGCTGCAGCAACCCTGGTGTCCCACTTTTTGC
 
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JMSF044I22+           TTCGTAGATATTGTGAAACCTTACTTAACAAAGAGTTCAAGTCCTGAGGATGTGATTTGG
JMSF021H21+           TTCGTAGATATTGTGAAACCTTACTTAACAAAGAGTTCAAGTCCTGAGGATGTGATTTGG
                      ____________________________________________________________
consensus             TTCGTAGATATTGTGAAACCTTACTTAACAAAGAGTTCAAGTCCTGAGGATGTGATTTGG
 
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JMSF044I22+           CTATTTCCCCAATCTGTTTGGCTGCTGTTAATCTTGTTGCTTGGGTTGACCCCGTGTCCA
JMSF021H21+           CTATTTCCCCAATCTGTTTGGCTGCTGTTAATCTTGTTGCTTGGGTTGACCCCGTGTCCA
                      ____________________________________________________________
consensus             CTATTTCCCCAATCTGTTTGGCTGCTGTTAATCTTGTTGCTTGGGTTGACCCCGTGTCCA
 
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JMSF044I22+           ACAAAGTGAGCAGGCGATTGAGCCGCGACGATTGCTGCTGAGCCATACTGCTCTGCTATC
JMSF021H21+           ACAAAGTGAGCAGGCGATTGAGCCGCGACGATTGCTGCTGAGCCATACTGCTCTGCTATC
                      ____________________________________________________________
consensus             ACAAAGTGAGCAGGCGATTGAGCCGCGACGATTGCTGCTGAGCCATACTGCTCTGCTATC
 
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JMSF044I22+           CCGTCCCAAGTTTTATGTCCAATCAACCTCCCCGATACTCGAAATCAACAAACACAAATC
JMSF021H21+           CCGTCCCAAGTTTTATGTCCAATCAACCTCCCCGATACTCGAAATCAACAAACACAAATC
                      ____________________________________________________________
consensus             CCGTCCCAAGTTTTATGTCCAATCAACCTCCCCGATACTCGAAATCAACAAACACAAATC
 
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JMSF044I22+           AACCGCCGCCATCACACAACATTTCCAATTTGGATTCACTTCATGACATGCATGTCAGTC
JMSF021H21+           AACCGCCGCCATCACACAACATTTCCAATTTGGATTCACTTCATGACATGCATGTCAGTC
                      ____________________________________________________________
consensus             AACCGCCGCCATCACACAACATTTCCAATTTGGATTCACTTCATGACATGCATGTCAGTC
 
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JMSF044I22+           GTGCAGTGCCATAACTTACACCACCATAAATAATCTGGAAAAAGATCTGTTGCAATGTCT
JMSF021H21+           GTGCAGTGCCATAACTTACACCACCATAAATAATCTGGAAAAAGATCTGTTGCAATGTCT
                      ____________________________________________________________
consensus             GTGCAGTGCCATAACTTACACCACCATAAATAATCTGGAAAAAGATCTGTTGCAATGTCT
 
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JMSF044I22+           TCTTCCTTCTGCTGCTTTCTACGATTAGGCTGTGATGAAGTGAGGACGAGGGTTTCG   
JMSF021H21+           TCTTCCTTCTGCTGCTTTCTACGATTAGGCTGTGATGAAGTGAGGACGAGGGTTTCGCTC
                      ____________________________________________________________
consensus             TCTTCCTTCTGCTGCTTTCTACGATTAGGCTGTGATGAAGTGAGGACGAGGGTTTCGCTC