Contig 005067:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN039P08Sequence623005067 (4)ref|XP_004238403.1|2e-11PREDICTED: rop guanine nucleotide exchange factor 1-like [Solanum lycopersicum]
JMSF007K23Sequence356005067 (4)756021370ref|XP_004292925.1|1e-11PREDICTED: rop guanine nucleotide exchange factor 1-like [Fragaria vesca subsp.
JMSF020P01Sequence641005067 (4)705018199
JMSF038B07Sequence647023255gb|EYU36815.1|2e-55hypothetical protein MIMGU_mgv1a003992mg [Erythranthe guttata]934005067 (4)ref|XP_004238403.1|3e-90PREDICTED: rop guanine nucleotide exchange factor 1-like [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF038B07-                                                             CATCCATCC
                      ____________________________________________________________
consensus                                                                CATCCATCC
 
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rJMSF038B07-          GCAGTCCTCTAGCTTGAACGAATTGTATAGTAATATACATGTACTTAGTTATAATGCATT
                      ____________________________________________________________
consensus             GCAGTCCTCTAGCTTGAACGAATTGTATAGTAATATACATGTACTTAGTTATAATGCATT
 
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rJMSF038B07-          TAATTGCTTGGCCAAAACATGAAAATGCAGGTATATAGAAGTACATTGAGTCCTTTGTTA
                      ____________________________________________________________
consensus             TAATTGCTTGGCCAAAACATGAAAATGCAGGTATATAGAAGTACATTGAGTCCTTTGTTA
 
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rJMSF038B07-          AGGTATGACGTCAGTGGCAGTGGCACCACACCTAATACTCTCCTAACTATACTTTACCTT
                      ____________________________________________________________
consensus             AGGTATGACGTCAGTGGCAGTGGCACCACACCTAATACTCTCCTAACTATACTTTACCTT
 
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rJMSF038B07-          CTGGCTTGCATATTATGTGTTCTCCTGGAGACATCAACTAATGAGGCTGAAGGACGGAAC
                      ____________________________________________________________
consensus             CTGGCTTGCATATTATGTGTTCTCCTGGAGACATCAACTAATGAGGCTGAAGGACGGAAC
 
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rJMSF038B07-          GCCTGGTCTGTTGGTAAAGGGGCACTAGGTTTTCGTTGGTATGAAAGTGAGCCAGAAGAA
                      ____________________________________________________________
consensus             GCCTGGTCTGTTGGTAAAGGGGCACTAGGTTTTCGTTGGTATGAAAGTGAGCCAGAAGAA
 
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rJMSF038B07-          ACCTGCCTCTGCAGAGAACATGCACCCCATCCTCTCCGATTCAGCATAGATGACTCTGCA
                      ____________________________________________________________
consensus             ACCTGCCTCTGCAGAGAACATGCACCCCATCCTCTCCGATTCAGCATAGATGACTCTGCA
 
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rJMSF038B07-          GCAACACGTCGTCTTGTGGCATCATCTATGTACAATAGATCATCAATCCTTGCCATTAAG
                      ____________________________________________________________
consensus             GCAACACGTCGTCTTGTGGCATCATCTATGTACAATAGATCATCAATCCTTGCCATTAAG
 
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rJMSF038B07-          TTGAAGGCTATGCTCTCCAACACCCTAGAATAGCTCTCAAGGATTGATTGCCCGACATCC
                      ____________________________________________________________
consensus             TTGAAGGCTATGCTCTCCAACACCCTAGAATAGCTCTCAAGGATTGATTGCCCGACATCC
 
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rJMSF038B07-          CTGTTATACTGAATCTTTTGCATGTCCAATGTAGTCTGCCGGAGCCCAGGTAAATTTAGC
                      ____________________________________________________________
consensus             CTGTTATACTGAATCTTTTGCATGTCCAATGTAGTCTGCCGGAGCCCAGGTAAATTTAGC
 
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rJMSF038B07-          TTCATGCTCCTAAGGATGGCCTCAGCTCGTTCTGATAACATTTTATCCCTTTCCTTGTTA
                      ____________________________________________________________
consensus             TTCATGCTCCTAAGGATGGCCTCAGCTCGTTCTGATAACATTTTATCCCTTTCCTTGTTA
 
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rJMSF038B07-          CCAACAAGACCTTTCATTGTGCCTCCCCATGATGCCTTTCCACTTTTCGCTGGATTCAAT
                      ____________________________________________________________
consensus             CCAACAAGACCTTTCATTGTGCCTCCCCATGATGCCTTTCCACTTTTCGCTGGATTCAAT
 
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rJMSF038B07-          TGCTTCTTTCTGTGCTTCTGCCTCCAGATATGCATTGCGGCCTCAATTCTATTAGCAATT
JMFN039P08+               TCTTTTTGTGCTTCTGCCTCCAGATATGCATTGCAGCCTCAATTCTATTAGCAATT
                      ____________________________________________________________
consensus             TGCTTCTTTTTGTGCTTCTGCCTCCAGATATGCATTGCGGCCTCAATTCTATTAGCAATT
 
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rJMSF038B07-          TCTGAAGCTGTATACTCTGATGATAGGTCCAAGTAATCAAGAAGGCATTCTGGGGACAAC
JMFN039P08+           TCTGAAGCTGTATACTCCGATGATAGGTCCAAGTAATCAAGAAGGCATTTTGGGGACAAA
                      ____________________________________________________________
consensus             TCTGAAGCTGTATACTCTGATGATAGGTCCAAGTAATCAAGAAGGCATTTTGGGGACAAC
 
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rJMSF038B07-          TGCCCAGTAGTAATGTCACT                                        
JMFN039P08+           TTCCCAGTAGTAATGTCACTTGTATATAATAAAACCACTTCCAAAAATGTTGGAAAAAAA
                      ____________________________________________________________
consensus             TTCCCAGTAGTAATGTCACTTGTATATAATAAAACCACTTCCAAAAATGTTGGAAAAAAA
 
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JMFN039P08+           CAAAGTAAATTGCATCTCAACCAAACCTCCAATATAGCAGTACTACTTAGCTGCATTTGC
                      ____________________________________________________________
consensus             CAAAGTAAATTGCATCTCAACCAAACCTCCAATATAGCAGTACTACTTAGCTGCATTTGC
 
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JMFN039P08+           TCTTCTCTATGTCCGGCCATGTCCTCTTTCATTAGCACAATAGTTAGCCGCTGTGCAGCT
                      ____________________________________________________________
consensus             TCTTCTCTATGTCCGGCCATGTCCTCTTTCATTAGCACAATAGTTAGCCGCTGTGCAGCT
 
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JMFN039P08+           TGCGGTTGCGGAGGCCGGAGAGCCACTCGGAGCGACGGCTTCGGCCTTCAGTAGTTCAGT
JMSF007K23+                                GCCACTCGGAGCGACGGCTTCGGCCTTCAGTAGTTCAGT
JMSF020P01+                                GCCACTCAGAGCGACAGCTTCTGCCTTCAGTAGTTCAGT
                      ____________________________________________________________
consensus             TGCGGTTGCGGAGGCCGGAGAGCCACTCGGAGCGACGGCTTCGGCCTTCAGTAGTTCAGT
 
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JMFN039P08+           GCGACGGCTTCGTAGAACAGGGCGACGGACTTCTGCTGCGGAGGCCGGAAAGCAGACGGC
JMSF007K23+           GCGACGGCTTCGTAGAACAGGGCGACGGACTTCTGCTGCGGAGGCCGGAAAGCAGACGGC
JMSF020P01+           GCGACGGCTTCGTAGAACAGGGCGATAGACTTCTGCTGCAGAGGCCGGAAAGCAGACGGC
                      ____________________________________________________________
consensus             GCGACGGCTTCGTAGAACAGGGCGACGGACTTCTGCTGCGGAGGCCGGAAAGCAGACGGC
 
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JMFN039P08+           GACTCAAGGGTTTAGGACGAGGGTTTCGACCTTCAGTAGTTCAGTGCGAGTGTGCGACAA
JMSF007K23+           GACTCAAGGGTTTAGGACGAGGGTTTCGATCTTCAGTAGTTCAGTGCGAGTGTGCGACAA
JMSF020P01+           GACTCAAGGGTTTAGGACGAGGGTTTCGACCTTCAGTAGTTCAGTGCGAGTGTGCGACAG
                      ____________________________________________________________
consensus             GACTCAAGGGTTTAGGACGAGGGTTTCGACCTTCAGTAGTTCAGTGCGAGTGTGCGACAA
 
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JMFN039P08+           CTTCGGAGAACAGGCCGACGAACTTCAACTACAGAGGCCGAAGAGCAAACGGCGACTCCG
JMSF007K23+           CTTCGGAGAACAGGCCGACGAACTTCAACTACAGAGGCCGAAGAGCAAACGGCGACTCCG
JMSF020P01+           CTTCGGAGAACAGGCCGACGAACTTCAACTACAGAGGCCGGAGAGCAAACGGCGACTCCA
                      ____________________________________________________________
consensus             CTTCGGAGAACAGGCCGACGAACTTCAACTACAGAGGCCGAAGAGCAAACGGCGACTCCG
 
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JMFN039P08+           GTGGTGGGAGCGAAGACGACGGGGAGGCTTTCCTGGCAGCGGAGGCGGCTGTGACGGCGT
JMSF007K23+           GTGGTGGGAGCGAAGACGACGGGGAGGCTTTCCTGGCAGCGGAGGCGGCTGTGACGGCGT
JMSF020P01+           GTGGTGGGAGCGAAGACGACGGGGAGGCTTTCCTGGCAGCGGAGGCGGCTGTGACGGCGT
                      ____________________________________________________________
consensus             GTGGTGGGAGCGAAGACGACGGGGAGGCTTTCCTGGCAGCGGAGGCGGCTGTGACGGCGT
 
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JMFN039P08+           GC                                                          
JMSF007K23+           GCGTAGGCGTTTGGTTGTGCGATGGAGCTCAGACT                         
JMSF020P01+           GCGTAGGCGTTTGGTTGTGCGATGGAGCTTAGACTGTAAGCGTGCGAAGGGTTTGGTGAC
                      ____________________________________________________________
consensus             GCGTAGGCGTTTGGTTGTGCGATGGAGCTTAGACTGTAAGCGTGCGAAGGGTTTGGTGAC
 
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JMSF020P01+           GTTGGTCTAAGTGTGTTTTTTTAAGTGAGCATGAGTAGGGTAACGTCCAAAATTTTGACC
                      ____________________________________________________________
consensus             GTTGGTCTAAGTGTGTTTTTTTAAGTGAGCATGAGTAGGGTAACGTCCAAAATTTTGACC