Contig 005059:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020A04Sequence580005059 (4)568005059 (4)
JMSF038M20Sequence579005059 (4)575005059 (4)

Alignment

This contig is upended


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rJMSF020A04+                                                GAATTTCTTCGGTTTTTCTGCG
rJMSF038M20+                                                GAATTTCTTCGGTTTTTCTGCG
JMSF038M20-                               GTAAGTTCATTCCACTGTGAATTTCTTCGGTTTTTCTGCG
JMSF020A04-                                                 GAATTTCTTCGGTTTTTCTGCG
                      ____________________________________________________________
consensus                                 GTAAGTTCATTCCACTGTGAATTTCTTCGGTTTTTCTGCG
 
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rJMSF020A04+          ATTTTGTTTGGACCCTTCGTTGATTGTGAAGTTGTGAATTGTTTGTTTGGAACNTTGAAC
rJMSF038M20+          ATTTTGTTTGGACCCTTCGTTGATTGNGAAGTTGTGAATTGTTTGTTTGGAACNTTGAAC
JMSF038M20-           ATTTTGTTTGGACCTTTCGTTGATTGTGAAGTTGTGAATTGTTTGTTTGGAACATTGAAC
JMSF020A04-           ATTTTGTTTGGACCTTTCGTTGATTGTGAAGTTGTGAATTGTTTGTTTGGAACATTGAAC
                      ____________________________________________________________
consensus             ATTTTGTTTGGACCTTTCGTTGATTGTGAAGTTGTGAATTGTTTGTTTGGAACATTGAAC
 
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rJMSF020A04+          CNGTGGGTAGAGACTAGAGAGGGTAAAGATCNAAGGGTGTTGAGTAGATCNAGCCCTGGT
rJMSF038M20+          CGGTGGGTAGAGACTAGAGAGGGTAAAGATCNAAGGGTGTTGAGTAGATCNAGCCCTGGT
JMSF038M20-           CGGTGGGTAGAGACTAGAGAGGGTAAAGATCAAAGGGTGTTGAGTAGATCAAGCCATGGT
JMSF020A04-           CGGTGGGTAGAGACTAGAGAGGGTAAAGATCAAAGGGTGTTGAGTAGATCAAGCCATGGT
                      ____________________________________________________________
consensus             CGGTGGGTAGAGACTAGAGAGGGTAAAGATCAAAGGGTGTTGAGTAGATCAAGCCCTGGT
 
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rJMSF020A04+          CTATTAAAGAATTCTTTTTTTTTTCCTTGTGCTTTTTTGGAATGAAAAATCAAAGAGTTT
rJMSF038M20+          CTATTAAAGAATTCTTTTTTTTTTCCTTGTGCTTTTTTGGAATGAAAAATCAAAGAGTTT
JMSF038M20-           CTATTAAAGAATTCTTTTTTTTTNCCTTGNGCTTTTTTGGAANGAAAAANCAAANAGTTT
JMSF020A04-           CTATTAAAGAATTCTTTTTTTTTNCCTNGNGCTTTTTTGGAANGAAAAANCAAANAGTTT
                      ____________________________________________________________
consensus             CTATTAAAGAATTCTTTTTTTTTTCCTTGTGCTTTTTTGGAATGAAAAATCAAAGAGTTT
 
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rJMSF020A04+          GCCTACCCACAAATAAGCTAAATAGATGGGAAGGATGATGCTTTACTTTTTGAAAGATTT
rJMSF038M20+          GCCTACCCACAAATAAGCTAAATAGATGGGAAGGATGATGCTTTACTTTTTGAAAGATTT
JMSF038M20-           GCCTACCCNCAAATAANCTAAATANATGGGAAGGATGATGCTTTACTTTTTGAAANATTT
JMSF020A04-           GCCTACCCNCAAATAACCTAAATANATGGGAAGGATGANGCTTTACTTTTTGAAANATTT
                      ____________________________________________________________
consensus             GCCTACCCACAAATAAGCTAAATAGATGGGAAGGATGATGCTTTACTTTTTGAAAGATTT
 
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rJMSF020A04+          GTTTTGTTAATTTTGTTGTTGTTTTGTGTTTCTATGTTTATTGTTCTGAAAAGATTTTGG
rJMSF038M20+          GTTTTGTTAATTTTGTTGTTGTTTTGTGTTTCTATGTTTATTGTTCTGAAAAGATTTTGG
JMSF038M20-           GTTTTGTTAATTTTGTTGTTGTTTTGGGTTNCNATGTTNATNGTNCTGAAAANATTTTGG
JMSF020A04-           GTTTNGTNAATTTTGTTGTTGTTTTGGGTTNCNATGTTNATNGTNCNGAAAANATTTTGG
                      ____________________________________________________________
consensus             GTTTTGTTAATTTTGTTGTTGTTTTGTGTTTCTATGTTTATTGTTCTGAAAAGATTTTGG
 
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rJMSF020A04+          TGTAGTTTTGGATTGATTATTTCTTTAATGGTTTTTGCTTTAGTTGTTTCTGCACTAAGA
rJMSF038M20+          TGTAGTTTTGGATTGATTATTTCTTTAATGGTTTTTGCTTTAGTTGTTTCTGCACTAAGA
JMSF038M20-           NGNAGTTTTGGATTGATTATTNCTTTAAGGGTTTTTGCTTTAGTTGTTNCNGCNCTAANA
JMSF020A04-           NGNAGTTTTGGATTGATTATTNCTTTAAGGGTTTTTGCTTTAGTTGTTNCNGCNCTAAAA
                      ____________________________________________________________
consensus             TGTAGTTTTGGATTGATTATTTCTTTAATGGTTTTTGCTTTAGTTGTTTCTGCACTAAGA
 
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rJMSF020A04+          TGATAAATTCACTCTGCCTTTGACCCTTTGTGTATCAGCTTTTTCATTCTTGTTTTGATA
rJMSF038M20+          TGATAAATTCACTCTGCCTTTGACCCTTTGTGTATCAGCTTTTTCATTCTTGTTTTGATA
JMSF038M20-           TGATAAATTCACNCTGCCTTTGACCCTTTGNGNANCACCTTTTNCATNCTNGTTTTGATA
JMSF020A04-           TGATAAATTCNCNCNGCCTTTGACCCTTTGNGNANCACCTTTTNCATNCTNGTTTTGATA
                      ____________________________________________________________
consensus             TGATAAATTCACTCTGCCTTTGACCCTTTGTGTATCAGCTTTTTCATTCTTGTTTTGATA
 
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rJMSF020A04+          AGTGAGCTTTTGTGTATCAATTATGTCTAGGAGTGGTTGATTGTACAGAGATAAAAATAT
rJMSF038M20+          AGTGAGCTTTTGTGTATCAATTATGTCTAGGAGTGGTTGATTGTACAGAGATAAAAATAT
JMSF038M20-           AGNGAGCTTTTGNGTANCAATTATGNCTAGGAGNGGTTGATTGTACANANATAAAAATAT
JMSF020A04-           AGNGANCTTTTGNGTANCAATTATGNCTAGGAGNGGTTGATTGTACANANATAAAAANAT
                      ____________________________________________________________
consensus             AGTGAGCTTTTGTGTATCAATTATGTCTAGGAGTGGTTGATTGTACAGAGATAAAAATAT
 
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rJMSF020A04+          TCCTGGAAGGATTGTTTCAGTAACTAGAGATCAAGGATT                     
rJMSF038M20+          TCCTGGAAGGATTGTTTCAGTAACTAGAGATCAAGGATT                     
JMSF038M20-           TCCTGGAAGGATTGTTTCAGTAACTANAGATCAAGGATT                     
JMSF020A04-           TCCNGGAAGGATNGTTNCAGTAACTANAGATCAAGGATTTAGATCAAAGGTGTTGAATAG
                      ____________________________________________________________
consensus             TCCTGGAAGGATTGTTTCAGTAACTAGAGATCAAGGATTTAGATCAAAGGTGTTGAATAG