Contig 005056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019K18Sequence541005056 (2)ref|XP_006368293.1|1e-14dehydration-responsive family protein [Populus trichocarpa] gb|ERP64862.1| dehyd750004254 (3)ref|XP_011092623.1|6e-85PREDICTED: probable methyltransferase PMT20 [Sesamum indicum] ref|XP_011092624.1
JMSF048A01Sequence686005056 (2)ref|XP_006368294.1|2e-59hypothetical protein POPTR_0001s01380g [Populus trichocarpa] gb|ERP64863.1| hypo773004254 (3)ref|XP_011092623.1|2e-98PREDICTED: probable methyltransferase PMT20 [Sesamum indicum] ref|XP_011092624.1

Alignment

This contig is upended


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JMSF048A01+                                                    AATCCAATCATATGGAACA
                      ____________________________________________________________
consensus                                                      AATCCAATCATATGGAACA
 
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JMSF048A01+           TTCCTGTACCAACATTCGCTTTTGCTCTTTGGCCATCTGATAGGCGGCTGATAGCCATCC
                      ____________________________________________________________
consensus             TTCCTGTACCAACATTCGCTTTTGCTCTTTGGCCATCTGATAGGCGGCTGATAGCCATCC
 
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JMSF048A01+           GGTGGAGGGACCAAACACTCCATTCTTTCAAACGGTGGCGGGCAGTGGCGTTCCATGAAT
                      ____________________________________________________________
consensus             GGTGGAGGGACCAAACACTCCATTCTTTCAAACGGTGGCGGGCAGTGGCGTTCCATGAAT
 
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JMSF048A01+           GTTAGTCTTTGCAGACCGTATTTCTTCCACCTCTTGGGATCAGCACAGGGAGTGTAATCC
JMSF019K18+                                                                      C
                      ____________________________________________________________
consensus             GTTAGTCTTTGCAGACCGTATTTCTTCCACCTCTTGGGATCAGCACAGGGAGTGTAATCC
 
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JMSF048A01+           TGAAAGTCGGGACTGCACTCAGGAAACAAAGTGTCATCGGTTTGCAGTGAGCCACCACCA
JMSF019K18+           TGAAAGTCGGGACTGCACTCAGGAAACAAAGTGTCATCGGTTTGCAGTGAGCCACCACCA
                      ____________________________________________________________
consensus             TGAAAGTCGGGACTGCACTCAGGAAACAAAGTGTCATCGGTTTGCAGTGAGCCACCACCA
 
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JMSF048A01+           CCGGCACCGGCAGTGCCCTCGAAAGATTCAGCCCCGTTGGATACATCATTAGTTGCATAA
JMSF019K18+           CCGGCACCGGCAGTGCCCTCGAAAGATTCAGCCCCCTNGGATACATCATTAGTTGCATAA
                      ____________________________________________________________
consensus             CCGGCACCGGCAGTGCCCTCGAAAGATTCAGCCCCGTTGGATACATCATTAGTTGCATAA
 
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JMSF048A01+           CCGTCCTTCTCCGAATAGAAGACTCCACCGAGATAAAACGAAATCCCACATAGCGCCACG
JMSF019K18+           CCGTCCTTCTCCGAATAGAAGACTCCACCGAGATAAAACGAAATCCCACATAGCGCCACG
                      ____________________________________________________________
consensus             CCGTCCTTCTCCGAATAGAAGACTCCACCGAGATAAAACGAAATCCCACATAGCGCCACG
 
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JMSF048A01+           AGCACTACCGCCATGGGGACTTTCCTCGTGTTTTGATCTTGTTTATGCAAGGGTTTCCCA
JMSF019K18+           AGCACTACCGCCATGGGGACTTTCCTCGTGTTTTGATCTTGTTTATGCAAGGGTTTCCCA
                      ____________________________________________________________
consensus             AGCACTACCGCCATGGGGACTTTCCTCGTGTTTTGATCTTGTTTATGCAAGGGTTTCCCA
 
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JMSF048A01+           TCTTTATACTTCATTGCCCCTGATTTCATCAACTATCTGCACTGATACACAAGCGTTAAA
JMSF019K18+           TCTTTATACTTCATTGCCCCTGATTTCATCAACTATCTGCACTGATACACAAGCGTTAAA
                      ____________________________________________________________
consensus             TCTTTATACTTCATTGCCCCTGATTTCATCAACTATCTGCACTGATACACAAGCGTTAAA
 
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JMSF048A01+           ACCCCAAGATTTCCTCTGATTGGAACGCAAGAGGAAAAAGAAAGGCCCCAGAAAAATGGC
JMSF019K18+           ACCCCAAGATTTCCTCTGATTGGAACGCAAGAGGAAAAAGAAAGGCCCCAGAAAAATGGC
                      ____________________________________________________________
consensus             ACCCCAAGATTTCCTCTGATTGGAACGCAAGAGGAAAAAGAAAGGCCCCAGAAAAATGGC
 
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JMSF048A01+           ATGTTCTTTGTCGTTTTTTGTTTTAAATACTCCGTATATAACTACAGAAGATCTTTGTCC
JMSF019K18+           ATGTTCTTTGTCGTTTTTTGTTTTAAATACTCCGTATATAACTACAGAAGATCTTTGTCC
                      ____________________________________________________________
consensus             ATGTTCTTTGTCGTTTTTTGTTTTAAATACTCCGTATATAACTACAGAAGATCTTTGTCC
 
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JMSF048A01+           ATTGCCATGGCTCGCTAGCTGTCCTGTTTTCTTGCTTGGCTTTTATGTCGACCCTTCTTT
JMSF019K18+           ATTGCCATGGCTCGCTAGCTGTCCTGTTTTCTTGCTTGGCTTTTATGTCGACCCTTCTTT
                      ____________________________________________________________
consensus             ATTGCCATGGCTCGCTAGCTGTCCTGTTTTCTTGCTTGGCTTTTATGTCGACCCTTCTTT
 
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JMSF048A01+           CCCCCT                                                      
JMSF019K18+           CTCCCTTCTTTCTCTCTTTCTTCTACCTTTTTTCATGTTTTATATCAACTAGTACTCCCA
                      ____________________________________________________________
consensus             CTCCCTTCTTTCTCTCTTTCTTCTACCTTTTTTCATGTTTTATATCAACTAGTACTCCCA