Contig 005053:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A20Sequence539005053 (4)ref|XP_004299037.1|5e-30PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A706001300 (4)ref|XP_006344171.1|1e-45PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMFF028P22Sequence602005053 (4)ref|XP_011076286.1|2e-39PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A673001300 (4)ref|XP_006344171.1|4e-46PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMSF011A08Sequence236005053 (4)746001300 (4)ref|XP_006344171.1|3e-56PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMSF019G23Sequence248005053 (4)710001300 (4)ref|XP_006344171.1|8e-59PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


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JMFF028P22+            CNTCAAAAGGCAAAGGCCCAGACAAATAATTCTCATAAAGAACCAAACTTTCCAACCCT
                      ____________________________________________________________
consensus              CNTCAAAAGGCAAAGGCCCAGACAAATAATTCTCATAAAGAACCAAACTTTCCAACCCT
 
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JMFF028P22+           AGAGCTCTGAAGAGCCCAGGGGGCAAGCTCCCATTAAGCCTATTACTCCTCAAGTTCACA
JMFF026A20+               CTCTGAAGAGCCCAGGGGGCAAGCTCCCATTAAGCCTATTACTCCTCAAGTTCACA
                      ____________________________________________________________
consensus             AGAGCTCTGAAGAGCCCAGGGGGCAAGCTCCCATTAAGCCTATTACTCCTCAAGTTCACA
 
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JMFF028P22+           TGCCTGAGCTGAGAGAGTGAGCCAAGGGAAGAAGAGAGAAATCCAGAGAGTTTCTTCTTG
JMFF026A20+           TGCCTGAGCTGAGAGAGTGAGCCAAGGGAAGAAGAGAGAAATCCAGAGAGTTTCTTCTTG
                      ____________________________________________________________
consensus             TGCCTGAGCTGAGAGAGTGAGCCAAGGGAAGAAGAGAGAAATCCAGAGAGTTTCTTCTTG
 
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JMFF028P22+           GGAATGCTGAGAGAGACAACCCTCTGGTCTTTGCATGTAATACCATTCCAAGAACAAGGG
JMFF026A20+           GGAATGCTGAGAGAGACAACCCTCTGGTCTTTGCATGTAATACCATTCCAAGAACAAGGG
                      ____________________________________________________________
consensus             GGAATGCTGAGAGAGACAACCCTCTGGTCTTTGCATGTAATACCATTCCAAGAACAAGGG
 
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JMFF028P22+           GTTTCATCGGAACGGTTCCAGTCACTCATTGACCCTTCTGGGTCATCTACTATAGATTTC
JMFF026A20+           GTTTCATCGGAACGGTTCCAGTCACTCATTGACCCTTNTGGGTCATCTACTATAGATTTC
                      ____________________________________________________________
consensus             GTTTCATCGGAACGGTTCCAGTCACTCATTGACCCTTCTGGGTCATCTACTATAGATTTC
 
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JMFF028P22+           TTGAAGATCAAAAGGGATTTTCCTTCTTCATTCAAAGAACTCAACACAGCTTGTGAATTG
JMSF011A08+                                   TCTTCATTCAAAGAACTCAACACAGCTTGTGAATTG
JMFF026A20+           TTGAAGATCAAAAGGGATTTTCCTTCTTCATTCAAAGAACTCAACACAGCTTGTGAATTG
                      ____________________________________________________________
consensus             TTGAAGATCAAAAGGGATTTTCCTTCTTCATTCAAAGAACTCAACACAGCTTGTGAATTG
 
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JMFF028P22+           CAGAAGATCAATATGAACAATGCTAATATTACCATCTTCCCCACTCTTTCTTGGAGAAAT
JMSF011A08+           CAGAAGATCAATATGAACAATGCTAATATTACCATCTTCCCCACTCTTTCTTGGAGAAAT
JMFF026A20+           CAGAAGATCAATATGAACAATGCTAATATTACCATCTTCCCCACTCTTTCTTGGAGAAAT
JMSF019G23+                                                               GGAGAAAT
                      ____________________________________________________________
consensus             CAGAAGATCAATATGAACAATGCTAATATTACCATCTTCCCCACTCTTTCTTGGAGAAAT
 
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JMFF028P22+           TATGGTGGATATGGAAGGTGATAGAGTGCCAATGAGCTTACCTTTGTACAAATGAAAACC
JMSF011A08+           TATGGTGGATATGGAAGGTGATAGAGTGCCAATGAGCTTACCTTTGTACAAATGAAAACC
JMFF026A20+           TATGGTGGATATGGAAGGTGATAGAGTGCCAATGAGCTTACCTTTGTACAAATGAAAACC
JMSF019G23+           TATGGTGGATATGGAAGGTGATAGAGTGCCAATGAGCTTACCTTTGTACAAATGAAAACC
                      ____________________________________________________________
consensus             TATGGTGGATATGGAAGGTGATAGAGTGCCAATGAGCTTACCTTTGTACAAATGAAAACC
 
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JMFF028P22+           AAGTTGATGCAGAGAAGAGAAAGGTTCGGACCAGAAGCAATGGAGTCCTAGAGAGAGAGA
JMSF011A08+           AAGTTGATGCAGAGAAGAGAAAGGTTCGGACCAGAAGCAATGGAGTCCTAGAGAGAGAGA
JMFF026A20+           AAGTTGATGCAGAGAAGAGAAAGGTTCGGACCAGAAGCAATGGAGTCCTAGAGAGAGAGA
JMSF019G23+           AAGTTGATGCAGAGAAGAGAAAGGTTCGGACCAGAAGCAATGGAGTCCTAGAGAGAGAGA
                      ____________________________________________________________
consensus             AAGTTGATGCAGAGAAGAGAAAGGTTCGGACCAGAAGCAATGGAGTCCTAGAGAGAGAGA
 
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JMFF028P22+           CAGACAGAGAGTAGAAAGCTAGCTTTGACAGTGAGAGAGGAGTGTGGAAAGAAGAAAATT
JMSF011A08+           CAGACAGAGAGTAGAAAGC                                         
JMFF026A20+           CAGACAGAGAGTAGAAAGCTAGCTTTGACAGTGAGAGAGGAGTGTGGAAAGAAGAAAATT
JMSF019G23+           CAGACAGAGAGTAGAAAGCTAGCTTTGACAGTGAGAGAGGAGTGTGGAAAGAAGAAAATT
                      ____________________________________________________________
consensus             CAGACAGAGAGTAGAAAGCTAGCTTTGACAGTGAGAGAGGAGTGTGGAAAGAAGAAAATT
 
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JMFF028P22+           AGC                                                         
JMFF026A20+           AGC                                                         
JMSF019G23+           AGCATTGGAGAAGGGAAAAAGTTGTGTTTAGCTATGCAAATAGCAAGGTAGTGGCAACTC
                      ____________________________________________________________
consensus             AGCATTGGAGAAGGGAAAAAGTTGTGTTTAGCTATGCAAATAGCAAGGTAGTGGCAACTC