| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040B24 | Sequence | 804 | 005051 (7) | ref|XP_006339950.1| | 4e-32 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] | |||||
| JMFN033L21 | Sequence | 616 | 005051 (7) | ref|XP_009612572.1| | 3e-57 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana tomentosiformis] g | |||||
| JMFS071D03 | Sequence | 625 | 005051 (7) | ref|XP_009612572.1| | 3e-57 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana tomentosiformis] g | |||||
| JMSF019D04 | Sequence | 339 | 005051 (7) | ref|XP_009612572.1| | 4e-13 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana tomentosiformis] g | 797 | 005051 (7) | ref|XP_006339950.1| | 2e-30 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] |
| JMSF032N09 | Sequence | 652 | 005051 (7) | ref|XP_009612572.1| | 4e-60 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana tomentosiformis] g | 699 | 005051 (7) | ref|XP_006339950.1| | 5e-08 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF019D04- AGACAGAC
rJMSF032N09- AGACAGAC
rJMFF040B24- TTATAACCAAATTCGTCAAGACAGAC
____________________________________________________________
consensus TTATAACCAAATTCGTCAAGACAGAC
. : . : . : . : . : . :
rJMSF019D04- GATTATACAAGTCACTTACAGCCTAAAGAAACTCACAAACCAGCCTTCACATGCAGAAGC
rJMSF032N09- GATTATACAAGTCACTTACAGCCTAAAGAAACTCACAAACCAGCCTTCACATGCAGAAGC
rJMFF040B24- GATTATACAAGTCACTTACAGCCTAAAGAAACTCACAAACCAGCCTTCACATGCAGAAGC
____________________________________________________________
consensus GATTATACAAGTCACTTACAGCCTAAAGAAACTCACAAACCAGCCTTCACATGCAGAAGC
. : . : . : . : . : . :
rJMSF019D04- AAGGGCAAGGGTAGGGGTTTGGGAAGAAGGGGGGATGGGGAATGGATTTTAATGTTTATG
rJMSF032N09- AAGGGCAAGGGTAGGGGTTTGGGAAGAAGGGGGGATGGGGAATGGATTTTAATGTTTATG
rJMFF040B24- AAGGGCAAGGGTAGGGGTTTGGGAAGAAGGGGGGATGGGGAATGGATTTTAATGTTTATG
____________________________________________________________
consensus AAGGGCAAGGGTAGGGGTTTGGGAAGAAGGGGGGATGGGGAATGGATTTTAATGTTTATG
. : . : . : . : . : . :
rJMSF019D04- CTTCAGAAATTTTTACAAATATGAAACATCCATGCTAGATCTACAATTCGTCAGATGCGC
rJMSF032N09- CTTCAGAAATTTTTACAAATATGAAACATCCATGCTAGATCTACAATTCGTCAGATGCGC
rJMFF040B24- CTTCAGAAATTTTTACAAATATGAAACATCCATGCTAGATCTACAATTCGTCAGATGCGC
____________________________________________________________
consensus CTTCAGAAATTTTTACAAATATGAAACATCCATGCTAGATCTACAATTCGTCAGATGCGC
. : . : . : . : . : . :
rJMSF019D04- AGGTTGAACTTTATTCCTTCTAACAAGTCCTAATCGCAGCAATACTCCATCTTATTTCTC
rJMSF032N09- AGGTTGAACTTTATTCCTTCTAACAAGTCCTAATCGCAGCAATACTCCATCTTATTTCTC
rJMFF040B24- AGGTTGAACTTTATTCCTTCTAACAAGTCCTAATCGCAGCAATACTCCATCTTATTTCTC
____________________________________________________________
consensus AGGTTGAACTTTATTCCTTCTAACAAGTCCTAATCGCAGCAATACTCCATCTTATTTCTC
. : . : . : . : . : . :
rJMSF019D04- TTGAGAACGAAAGGGATCTTCTGGCCAACTTCAATTCAAGACCTCACCGCAGCATCTCCT
rJMSF032N09- TTGAGAACGAAAGGGATCTTCTGGCCAACTTCAATTCAAGACCTCACCGCAGCATCTCCT
rJMFF040B24- TTGAGAACGAAAGGGATCTTCTGGCCAACTTCAATTCAAGACCTCACCGCAGCATCTCCT
____________________________________________________________
consensus TTGAGAACGAAAGGGATCTTCTGGCCAACTTCAATTCAAGACCTCACCGCAGCATCTCCT
. : . : . : . : . : . :
rJMSF019D04- TCACCCGACCTACTGCTGCTAACACCAACTTCCCCTTCACAGGCACTATCCCCTGGGCAG
rJMSF032N09- TCACCCAACCTACTGCTGCTAACACCAACTTCCCCTTCACAGGCACTATCCCCTGGGCAG
rJMFF040B24- TCACCCAACCTACTGCTGCTAACACCAACTTCCCCTTCACAGGCACTATCCCCTGGGCAG
____________________________________________________________
consensus TCACCCAACCTACTGCTGCTAACACCAACTTCCCCTTCACAGGCACTATCCCCTGGGCAG
. : . : . : . : . : . :
rJMSF019D04- CATGGCAAACTCGAAACAGTCTCCACACTAGTAGCCCTCCTGGCAACCCCAACTCCAAGA
rJMSF032N09- CATGGCAAACTCGAAACAGTCTCCACACTAGTAGCCCTCCTGGCAACCCCAACTCCAAGA
rJMFF040B24- CATGGCAAACTCGAAACAGTCTCCACACTAGTAGCCCTCCTGGCAACCCCAACTCCAAGA
____________________________________________________________
consensus CATGGCAAACTCGAAACAGTCTCCACACTAGTAGCCCTCCTGGCAACCCCAACTCCAAGA
. : . : . : . : . : . :
rJMSF019D04- CCAGCTTCCCCAATTTGTGTAGGAGAAAGCAAAAAGACTTCACTGGTGCCATGACTGCCA
rJMSF032N09- CCAGCTTCCCCAATTTGTGTAGGAGAAAGCAAAAAGACTTCACTGGTGCCATGACTGCCA
rJMFF040B24- CCAGCTTCCCCAATTTGTGTAGGAGAAAGCAAAAAGACTTCACTGGTGCCATGACTGCCA
____________________________________________________________
consensus CCAGCTTCCCCAATTTGTGTAGGAGAAAGCAAAAAGACTTCACTGGTGCCATGACTGCCA
. : . : . : . : . : . :
rJMSF019D04- TTGCTTTCAATTACAGTCTGATGCCTTCGTCCAATATGTATAAGGGCTTCAACCTCACTC
rJMSF032N09- TTGCTTTCAATTACAGTCTGATGCCTTCGTCCAATATGTATAAGGGCTTCAACCTCACTC
rJMFF040B24- TTGCTTTCAATTACAGTCTGATGCCTTCGTCCAATATGTATAAGGGCTTCAACCTCACTC
____________________________________________________________
consensus TTGCTTTCAATTACAGTCTGATGCCTTCGTCCAATATGTATAAGGGCTTCAACCTCACTC
. : . : . : . : . : . :
rJMSF019D04- CTAGCAATACGTCTGATAGCACTCTGAAAACCAAAAAGCTCCTCATCATCATCCATCAAT
rJMSF032N09- CTAGCAATACGTCTGATAGCACTCTGAAAACCAAAAAGCTCCTCATCATCATCCATCAAT
rJMFF040B24- CTAGCAATACGTCTGATAGCACTCTGAAAACCAAAAAGCTCCTCATCATCATCCATCAAT
____________________________________________________________
consensus CTAGCAATACGTCTGATAGCACTCTGAAAACCAAAAAGCTCCTCATCATCATCCATCAAT
. : . : . : . : . : . :
rJMSF019D04- TCTTCGAGTCTCATTGCTCCTACGAAATTATCCCCCCTGGGCAAAGTCTCGACCTCGGAG
rJMSF032N09- TCTTCGAGTCTCATTGCTCCTACGAAATTATCCCCCCTGGGCAAAGTCTCGACCTCGGAG
rJMFF040B24- TCTTCGAGTCTCATTGCTCCTACGAAATTATCCCCCCTGGGCAAAGTCTCGACCTCGGAG
____________________________________________________________
consensus TCTTCGAGTCTCATTGCTCCTACGAAATTATCCCCCCTGGGCAAAGTCTCGACCTCGGAG
. : . : . : . : . : . :
rJMSF019D04- TCCTCATCTTCCCGCGGAGGAAGCCGGAACCGACAAACCGGACACGAGTTATTCATCTCC
rJMSF032N09- TCCTCATCTTCCCGCGGA
rJMFF040B24- TCCTCATCTTCCCGCGGAGGAAGCCGGAACCGACAAACCGGACACGAGTTATTCATCTCC
____________________________________________________________
consensus TCCTCATCTTCCCGCGGAGGAAGCCGGAACCGACAAACCGGACACGAGTTATTCATCTCC
. : . : . : . : . : . :
rJMSF019D04- AACCACGGCAAAATGCAATCGGAATGGTACATGTGCTTACAGGGCAACATTTTCAC
rJMFF040B24- NACCACNGCAAAATGCAATCGGAATGGTACATGTGCTTACAGGGCAACATTTTCAC
JMFS071D03+ GGCAAAATGCAATCGGAATGGTACATGTGCTTACAGGGCAACATTTTCACTTCC
JMFN033L21+ GGCAAAATGCAATCGGAATGGTACATGTGCTTACAGGGCAACATTTTCACTTCC
JMSF032N09+ GGCAAAATGCAATCGGAATGGTACATGTGCTTACAGGGCAACATTTTCACTTCC
____________________________________________________________
consensus AACCACGGCAAAATGCAATCGGAATGGTACATGTGCTTACAGGGCAACATTTTCACTTCC
. : . : . : . : . : . :
JMFS071D03+ AGGTTTAACACGAATAGGTCCTTGCAAATCGGGCAGGGTATAACCGGATCCTTGTCCAGA
JMFN033L21+ AGGTTTAACACGAATAGGTCCTTGCAAATCGGGCAGGGTATAACCGGATCCTTGTCCAGA
JMSF032N09+ AGGTTTAACACGAATAGGTCCTTGCAAATCGGGCAGGGTATAACCGGATCCTTGTCCAGA
____________________________________________________________
consensus AGGTTTAACACGAATAGGTCCTTGCAAATCGGGCAGGGTATAACCGGATCCTTGTCCAGA
. : . : . : . : . : . :
JMFS071D03+ ATTGAAGAGTCAATTTGTAAGTCCTGTAGCGATTGTATAGCGGACTTTGAGGTAGGGTTG
JMFN033L21+ ATTGAAGAGTCAATTTGTAAGTCCTGTAGCGATTGTATAGCGGACTTTGAGGTAGGGTTG
JMSF032N09+ ATTGAAGAGTCAATTTGTAAGTCCTGTAGCGATTGTATAGCGGACTTTGAGGTAGGGTTG
____________________________________________________________
consensus ATTGAAGAGTCAATTTGTAAGTCCTGTAGCGATTGTATAGCGGACTTTGAGGTAGGGTTG
. : . : . : . : . : . :
JMFS071D03+ TGGGGGCGATTGGCGGTGGTGAAGACGTCGTTGGTGGTGGTTAGATGGTGGACAAGGCGG
JMFN033L21+ TGGGGGCGATTGGCGGTGGTGAAGACGTCGTTGGTGGTGGTTAGATGGTGGACAAGGCGG
JMSF032N09+ TGGGGGCGATTGGCGGTGGTGAAGACGTCGTTGGTGGTGGTTAGATGGTGGACAAGGCGG
____________________________________________________________
consensus TGGGGGCGATTGGCGGTGGTGAAGACGTCGTTGGTGGTGGTTAGATGGTGGACAAGGCGG
. : . : . : . : . : . :
JMFS071D03+ TGGAGATAAGGGCTGTCGAGGAGGAAGTTCTCGTCGGAGGGGACGAGGGTTGTACTAGGG
JMFN033L21+ TGGAGATAAGGGCTGTCGAGGAGGAAGTTCTCGTCGGAGGGGACGAGGGTTGTACTAGGG
JMSF032N09+ TGGAGATAAGGGCTGTCGAGGAGGAAGTTCTCGTCGGAGGGGACGAGGGTTGTACTAGGG
____________________________________________________________
consensus TGGAGATAAGGGCTGTCGAGGAGGAAGTTCTCGTCGGAGGGGACGAGGGTTGTACTAGGG
. : . : . : . : . : . :
JMFS071D03+ TCCACGAACATGGGAGCTAAGCTAGGGCTAGTACCGAGGCTGTGTTGCGGGGGGAGAGGA
JMFN033L21+ TCCACGAACATGGGAGCTAAGCTAGGGCTAGTACCGAGGCTGTGTTGCGGGGGGAGAGGA
JMSF032N09+ TCCACGAACATGGGAGCTAAGCTAGGGCTAGTACCGAGGCTGTGTTGCGGGGGGAGAGGA
JMSF019D04+ GCTAGGGCTAGTACCGAGGCTNTGTTGC-GGGGGAGAGGA
____________________________________________________________
consensus TCCACGAACATGGGAGCTAAGCTAGGGCTAGTACCGAGGCTGTGTTGCGGGGGGAGAGGA
. : . : . : . : . : . :
JMFS071D03+ GGAGGAGCAGGAGCAAAGGAGTCCATTTGCTCGAGGAAGTCGGAGTTGCAGTGAGGGCAA
JMFN033L21+ GGAGGAGCAGGAGCAAAGGAGTCCATTTGCTCGAGGAAGTCGGAGTTGCAGTGAGGGCAA
JMSF032N09+ GGAGGAGCAGGAGCAAAGGAGTCCATTTGCTCGAGGAAGTCGGAGTTGCAGTGAGGGCAA
JMSF019D04+ GGAGGAGCAGGAGCAAAGGAGTCCATTTGCTCGAGGAAGTCGGAGTTGCAGTGAGGGCAA
____________________________________________________________
consensus GGAGGAGCAGGAGCAAAGGAGTCCATTTGCTCGAGGAAGTCGGAGTTGCAGTGAGGGCAA
. : . : . : . : . : . :
JMFS071D03+ CGCGCGGGGGAAGGCGTGGGAGGGCAGAGGAGGAAGACGCTCATGTCGCATTCGTGACAC
JMFN033L21+ CGCGCGGGGGAAGGCGTGGGAGGGCAGAGGAGGAAGACGCTCATGTCGCATTCGTGACAC
JMSF032N09+ CGCGCGGGGGAAGGCGTGGGAGGGCAGAGGAGGAAGACGCTCATGTCGCATTCGTGACAC
JMSF019D04+ CGCGCGGGGGAAGGCGTGGGAGGGCAGAGGAGGAAGACGCTCATGTCGCATTCGTGACAC
____________________________________________________________
consensus CGCGCGGGGGAAGGCGTGGGAGGGCAGAGGAGGAAGACGCTCATGTCGCATTCGTGACAC
. : . : . : . : . : . :
JMFS071D03+ CAGTAAGTCTGGAGGTGATGCGGTTGCTGTTGATTCTGAGTAGTAGTAGCGGCGGCGGTG
JMFN033L21+ CAGTAAGTCTGGAGGTGATGCGGTTGCTGTTGATTCTGAGTAGTAGTAGCGGCGGCGGTG
JMSF032N09+ CAGTAAGTCTGGAGGTGATGCGGTTGCTGTTGATTCTGAGTAGTAGTAGCGGCGGCGGTG
JMSF019D04+ CAGTAAGTCTGGAGGTGATGCGGTTGCTGTTGATTCTGAGTAGTAGTAGCGGCGGCGGTG
____________________________________________________________
consensus CAGTAAGTCTGGAGGTGATGCGGTTGCTGTTGATTCTGAGTAGTAGTAGCGGCGGCGGTG
. : . : . : . : . : . :
JMFS071D03+ GTTGTTGCGACGTCGGCGGAAGTGGCGGCGGTTGAAGCCATGGCGGTGGAGGAGCCGCGG
JMFN033L21+ GTTGTTGCGACGTCGGCGGAAGTGGCGGCGGTTGAAGCCATGGCGGTGGAGGAGCCGCGG
JMSF032N09+ GTTGTTGCGACGTCGGCGGAAGTGGCGGCGGTTGAAGCCATGGCGGTGGAGGAGCCGCGG
JMSF019D04+ GTTGTTGCGACGTCGGCGGAAGTGGCGGCGGTTGAAGCCATGGCGGTGGAGGAGCCGCGG
____________________________________________________________
consensus GTTGTTGCGACGTCGGCGGAAGTGGCGGCGGTTGAAGCCATGGCGGTGGAGGAGCCGCGG
. : . : . : . : . : . :
JMFS071D03+ TGGGGACTTGACTTGCTAGTGACGCACTTCG
JMFN033L21+ TGGGGACTTGACTTGCTAGTGA
JMSF032N09+ TGGGGACTTGACTTGCTAGTGACGCACTTCGGGAGGAGATAGACTCGCTC
JMSF019D04+ TGGGGACTTGACTTGCTAGTGACGCACTTCGGGAGGAGATAGACTCGCTCTGCTCCGTTC
____________________________________________________________
consensus TGGGGACTTGACTTGCTAGTGACGCACTTCGGGAGGAGATAGACTCGCTCTGCTCCGTTC