Contig 005048:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010A18Sequence537005048 (12)gb|KJB81940.1|6e-59hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth668005048 (12)gb|KJB81940.1|4e-75hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFF043O21Sequence643005048 (12)gb|KJB81940.1|1e-73hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth561005048 (12)gb|KJB81940.1|6e-68hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN003C24Sequence627005048 (12)gb|KJB81940.1|2e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN020H21Sequence675005048 (12)gb|KJB81940.1|3e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN037I16Sequence597005048 (12)gb|KJB81940.1|7e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN038I20Sequence612005048 (12)gb|KJB81940.1|2e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN044B01Sequence602005048 (12)gb|KJB81940.1|2e-73hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMSF018O05Sequence466005048 (12)gb|KJB81940.1|1e-40hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth670005048 (12)gb|KJB81940.1|3e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMSF040C12Sequence507005048 (12)gb|KJB81940.1|2e-50hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010A18-                                                 ATTTATCAAGTTCAGGCGTCA
                      ____________________________________________________________
consensus                                                    ATTTATCAAGTTCAGGCGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-                  GCAATTACTAGAGTCACCTTAGACAGAACAGCAATACAGCAGTATTCAACTA
rJMFF010A18-          AAAAATATGCAATTACTAGAGTCACCTTAGACAGAACAGCAATACAGCAGTATTCAACTA
rJMSF018O05-                                                       AGCAGTATTCAACTA
JMFN020H21+                                                        AGCAGTATTCANCTA
                      ____________________________________________________________
consensus             AAAAATATGCAATTACTAGAGTCACCTTAGACAGAACAGCAATACAGCAGTATTCAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          TACCGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
rJMFF010A18-          TACAGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
JMFN037I16+                       ACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
rJMSF018O05-          TACAGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
JMFF043O21+               GGGCAATAACAGGTCTNTANAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
JMFN020H21+           TACAGGGCAATAACAGGTCTTTA-AAGCCATTGTGTCACAAATTTCTACTGCGTATAAAT
JMFN038I20+                                                               GTATAAAT
                      ____________________________________________________________
consensus             TACAGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
rJMFF010A18-          AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFN037I16+           AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
rJMSF018O05-          AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFF043O21+           AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTNTTCTATGCAG
JMFN020H21+           AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFN038I20+           AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFN044B01+                                                            TTTCTATGCAG
JMFN003C24+                    AGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
                      ____________________________________________________________
consensus             AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
rJMFF010A18-          GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN037I16+           GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
rJMSF018O05-          GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFF043O21+           GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN020H21+           GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN038I20+           GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN044B01+           GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN003C24+           GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFF010A18+                                                                   CTTG
                      ____________________________________________________________
consensus             GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
rJMFF010A18-          AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN037I16+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
rJMSF018O05-          AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFF043O21+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN020H21+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN038I20+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN044B01+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN003C24+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFF010A18+           AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMSF040C12+                                          CGTATTTGGTTGCAATCGATGGGGACTCA
                      ____________________________________________________________
consensus             AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
rJMFF010A18-          TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN037I16+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
rJMSF018O05-          TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFF043O21+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN020H21+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN038I20+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN044B01+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN003C24+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFF010A18+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMSF040C12+           TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMSF018O05+                         GTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
                      ____________________________________________________________
consensus             TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
rJMFF010A18-          ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN037I16+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
rJMSF018O05-          ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFF043O21+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN020H21+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN038I20+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN044B01+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN003C24+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFF010A18+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMSF040C12+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMSF018O05+           ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
                      ____________________________________________________________
consensus             ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
rJMFF010A18-          AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN037I16+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
rJMSF018O05-          AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFF043O21+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN020H21+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN038I20+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN044B01+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN003C24+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFF010A18+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMSF040C12+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMSF018O05+           AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
                      ____________________________________________________________
consensus             AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          GCGGTATTCTGAGCCTCGCAGACNATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
rJMFF010A18-          GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN037I16+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
rJMSF018O05-          GCGGTATTCTGAGCCTCGCANACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFF043O21+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN020H21+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN038I20+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN044B01+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN003C24+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFF010A18+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMSF040C12+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMSF018O05+           GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
                      ____________________________________________________________
consensus             GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF043O21-          GCAAGAGAAGCGGTGGAACGGATCTTAAG                               
rJMFF010A18-          GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN037I16+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTTTAAACTCAGAGAAACGAACGGAGGTC
rJMSF018O05-          GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFF043O21+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN020H21+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN038I20+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN044B01+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN003C24+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFF010A18+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMSF040C12+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMSF018O05+           GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
                      ____________________________________________________________
consensus             GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010A18-          CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGA             
JMFN037I16+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
rJMSF018O05-          CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFF043O21+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN020H21+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN038I20+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN044B01+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN003C24+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFF010A18+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMSF040C12+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMSF018O05+           CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
                      ____________________________________________________________
consensus             CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN037I16+           GTGAGAGTT                                                   
rJMSF018O05-          GTGAGAGTTTCTAACACAGCAGCCATGGATGG                            
JMFF043O21+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGG                  
JMFN020H21+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFN038I20+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFN044B01+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFN003C24+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFF010A18+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMSF040C12+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMSF018O05+           GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
                      ____________________________________________________________
consensus             GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020H21+           G                                                           
JMFN038I20+           GTGA                                                        
JMFN044B01+           GTGAGAGATATTTACAGGGGAAAGATGTGAGA                            
JMFN003C24+           GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGA                        
JMFF010A18+           GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAG       
JMSF040C12+           GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAG       
JMSF018O05+           GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAGGTCTGCC
                      ____________________________________________________________
consensus             GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAGGTCTGCC