Contig 005048:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010A18Sequence537005048 (12)gb|KJB81940.1|6e-59hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth668005048 (12)gb|KJB81940.1|4e-75hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFF043O21Sequence643005048 (12)gb|KJB81940.1|1e-73hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth561005048 (12)gb|KJB81940.1|6e-68hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN003C24Sequence627005048 (12)gb|KJB81940.1|2e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN020H21Sequence675005048 (12)gb|KJB81940.1|3e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN037I16Sequence597005048 (12)gb|KJB81940.1|7e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN038I20Sequence612005048 (12)gb|KJB81940.1|2e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMFN044B01Sequence602005048 (12)gb|KJB81940.1|2e-73hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMSF018O05Sequence466005048 (12)gb|KJB81940.1|1e-40hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth670005048 (12)gb|KJB81940.1|3e-74hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth
JMSF040C12Sequence507005048 (12)gb|KJB81940.1|2e-50hypothetical protein B456_013G168000 [Gossypium raimondii] gb|KJB81941.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF010A18- ATTTATCAAGTTCAGGCGTCA
                      ____________________________________________________________
consensus ATTTATCAAGTTCAGGCGTCA
 
. : . : . : . : . : . :
rJMFF043O21- GCAATTACTAGAGTCACCTTAGACAGAACAGCAATACAGCAGTATTCAACTA
rJMFF010A18- AAAAATATGCAATTACTAGAGTCACCTTAGACAGAACAGCAATACAGCAGTATTCAACTA
rJMSF018O05- AGCAGTATTCAACTA
JMFN020H21+ AGCAGTATTCANCTA
                      ____________________________________________________________
consensus AAAAATATGCAATTACTAGAGTCACCTTAGACAGAACAGCAATACAGCAGTATTCAACTA
 
. : . : . : . : . : . :
rJMFF043O21- TACCGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
rJMFF010A18- TACAGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
JMFN037I16+ ACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
rJMSF018O05- TACAGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
JMFF043O21+ GGGCAATAACAGGTCTNTANAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
JMFN020H21+ TACAGGGCAATAACAGGTCTTTA-AAGCCATTGTGTCACAAATTTCTACTGCGTATAAAT
JMFN038I20+ GTATAAAT
                      ____________________________________________________________
consensus TACAGGGCAATAACAGGTCTTTTAAAGCCATTGTGTCACAAAATTCTACTGCGTATAAAT
 
. : . : . : . : . : . :
rJMFF043O21- AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
rJMFF010A18- AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFN037I16+ AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
rJMSF018O05- AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFF043O21+ AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTNTTCTATGCAG
JMFN020H21+ AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFN038I20+ AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
JMFN044B01+ TTTCTATGCAG
JMFN003C24+ AGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
                      ____________________________________________________________
consensus AATATGCTGAGTGAGGGCTGAATTCCCACCAAGCAAACTTAACAGAACTTTTCTATGCAG
 
. : . : . : . : . : . :
rJMFF043O21- GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
rJMFF010A18- GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN037I16+ GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
rJMSF018O05- GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFF043O21+ GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN020H21+ GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN038I20+ GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN044B01+ GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFN003C24+ GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
JMFF010A18+ CTTG
                      ____________________________________________________________
consensus GTGCACAATGTCGATTTGGGAACTGCACCGATTACTGCATCCCTTTTCTCCCCATTCTTG
 
. : . : . : . : . : . :
rJMFF043O21- AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
rJMFF010A18- AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN037I16+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
rJMSF018O05- AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFF043O21+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN020H21+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN038I20+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN044B01+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFN003C24+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMFF010A18+ AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
JMSF040C12+ CGTATTTGGTTGCAATCGATGGGGACTCA
                      ____________________________________________________________
consensus AAAATCATGACAGTTGGGATGCTTCGGATCCCGTATTTGGTTGCAATCGATGGGGACTCA
 
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rJMFF043O21- TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
rJMFF010A18- TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN037I16+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
rJMSF018O05- TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFF043O21+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN020H21+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN038I20+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN044B01+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFN003C24+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMFF010A18+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMSF040C12+ TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
JMSF018O05+ GTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
                      ____________________________________________________________
consensus TCGGTGTTCACCTTGTAGCATTTAAGCTTACCAGCATACTCCTTTGCTAGTTCATCAATA
 
. : . : . : . : . : . :
rJMFF043O21- ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
rJMFF010A18- ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN037I16+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
rJMSF018O05- ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFF043O21+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN020H21+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN038I20+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN044B01+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFN003C24+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMFF010A18+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMSF040C12+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
JMSF018O05+ ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
                      ____________________________________________________________
consensus ACCGGATGGATCATCCGGCATGGACCACACCATGGTGCCCAAAATTCAACAAGAACAGGA
 
. : . : . : . : . : . :
rJMFF043O21- AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
rJMFF010A18- AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN037I16+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
rJMSF018O05- AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFF043O21+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN020H21+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN038I20+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN044B01+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFN003C24+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMFF010A18+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMSF040C12+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
JMSF018O05+ AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
                      ____________________________________________________________
consensus AGGTCACAGTCAAGGACATTTGATTGCCATGTGTCATCAGAAACAGGAGGAACCTGAGTG
 
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rJMFF043O21- GCGGTATTCTGAGCCTCGCAGACNATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
rJMFF010A18- GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN037I16+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
rJMSF018O05- GCGGTATTCTGAGCCTCGCANACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFF043O21+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN020H21+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN038I20+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN044B01+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFN003C24+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMFF010A18+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMSF040C12+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
JMSF018O05+ GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
                      ____________________________________________________________
consensus GCGGTATTCTGAGCCTCGCAGACAATCCGACCTCCGCGGAAAGAGATTTTGGAGCTGGAA
 
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rJMFF043O21- GCAAGAGAAGCGGTGGAACGGATCTTAAG
rJMFF010A18- GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN037I16+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTTTAAACTCAGAGAAACGAACGGAGGTC
rJMSF018O05- GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFF043O21+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN020H21+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN038I20+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN044B01+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFN003C24+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMFF010A18+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMSF040C12+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
JMSF018O05+ GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
                      ____________________________________________________________
consensus GCAAGAGAAGCGGTGGAACGGATCTTAAGGCCTCTAAACTCAGAGAAACGAACGGAGGTC
 
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rJMFF010A18- CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGA
JMFN037I16+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
rJMSF018O05- CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFF043O21+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN020H21+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN038I20+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN044B01+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFN003C24+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMFF010A18+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMSF040C12+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
JMSF018O05+ CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
                      ____________________________________________________________
consensus CGGCGACCGGAGAAGGAAGAAGCAGAGATCGGAGCCAAGGGCGCGGAGGCGCGAGGAACC
 
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JMFN037I16+ GTGAGAGTT
rJMSF018O05- GTGAGAGTTTCTAACACAGCAGCCATGGATGG
JMFF043O21+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGG
JMFN020H21+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFN038I20+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFN044B01+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFN003C24+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMFF010A18+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMSF040C12+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
JMSF018O05+ GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
                      ____________________________________________________________
consensus GTGAGAGTTTCTAACACAGCAGCCATGGATGGAAGCTTGAGGTATGGCGAGGGAGGAAGA
 
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JMFN020H21+ G
JMFN038I20+ GTGA
JMFN044B01+ GTGAGAGATATTTACAGGGGAAAGATGTGAGA
JMFN003C24+ GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGA
JMFF010A18+ GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAG
JMSF040C12+ GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAG
JMSF018O05+ GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAGGTCTGCC
                      ____________________________________________________________
consensus GTGAGAGATATTTACAGGGGAAAGATGTGAGATGGAGGAAGGAGTGGAGTTAGGTCTGCC