Contig 005046:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN025A19Sequence655005046 (6)emb|CDO99403.1|3e-122unnamed protein product [Coffea canephora]
JMSF006K13Sequence408007465 (32)gb|EQY01644.1|3e-27inner membrane protein [Escherichia coli UMEA 3201-1]338005046 (6)
JMSF006M15Sequence223005046 (6)gb|ACA51026.1|1e-17hypothetical protein [Oryza sativa Japonica Group]269005046 (6)
JMSF018G18Sequence473005046 (6)ref|XP_006360327.1|7e-78PREDICTED: inosine triphosphate pyrophosphatase-like [Solanum tuberosum]779005046 (6)emb|CDO99403.1|2e-108unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF006M15-                                                           AATATGCGAAA
rJMSF006K13-                                   GATGTCAGTTCCTAACTGTTGTAAAATATGCGAAA
rJMSF018G18-                                    ATGTCAGTTCCTAACTGTTGTAAAATATGCGAAA
                      ____________________________________________________________
consensus                                      GATGTCAGTTCCTAACTGTTGTAAAATATGCGAAA
 
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rJMSF006M15-          GAATTTACTATATTTTGTTCACATGTATGCTACTAATTAAGCTAGATAGAGTAGAACTAA
rJMSF006K13-          GAATTTACTATATTTTGTTCACATGTATGCTACTAATTAAGCTAGATAGAGTAGAACTAA
rJMSF018G18-          GAATTTACTATATTTTGTTCACATGTATGCTACTAATTAAGCTAGATAGAGTAGAACTAA
                      ____________________________________________________________
consensus             GAATTTACTATATTTTGTTCACATGTATGCTACTAATTAAGCTAGATAGAGTAGAACTAA
 
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rJMSF006M15-          AATTCATGGTACCAAAAATAAATCTTCGTTACAAAATTCCCGGCCTCTACCCAATAGGCC
rJMSF006K13-          AATTCATGGTACCAAAAATAAATCTTCGTTACAAAATTCCCGGCCTCTACCCAATAGGCC
rJMSF018G18-          AATTCATGGTACCAAAAATAAATCTTCGTTACAAAATTCCCGGCCTCTACCCAATAGGCC
                      ____________________________________________________________
consensus             AATTCATGGTACCAAAAATAAATCTTCGTTACAAAATTCCCGGCCTCTACCCAATAGGCC
 
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rJMSF006M15-          AATACCTAATCCGAGGATGCTGTGGAACCAACTAGTGTCGTTGATCATTGTTGTACTACT
rJMSF006K13-          AATACCTAATCCGAGGATGCTGTGGAACCAACTAGTGTCGTTGATCATTGTTGTACTACT
rJMSF018G18-          AATACCTAATCCGAGGATGCTGTGGAACCAACTAGTGTCGTTGATCATTGTTGTACTACT
                      ____________________________________________________________
consensus             AATACCTAATCCGAGGATGCTGTGGAACCAACTAGTGTCGTTGATCATTGTTGTACTACT
 
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rJMSF006M15-          ACTAAAAGCATCTCCNATGGTTATAGTTTTTGAANAGTTTTTGCATGTGTGACTAAGTAG
rJMSF006K13-          ACTAAAAGCATCTCCAATGGTTATAGTTTTTGAAGAGTTTTTGCATGTGTGACTAAGTAG
rJMSF018G18-          ACTAAAAGCATCTCCAATGGTTATAGTTTTTGAAGAGTTTTTGCATGTGTGACTAAGTAG
JMFN025A19+                                                           GTGACTAAGTAG
                      ____________________________________________________________
consensus             ACTAAAAGCATCTCCAATGGTTATAGTTTTTGAAGAGTTTTTGCATGTGTGACTAAGTAG
 
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rJMSF006M15-          ATGCGTCTGTCTGGAA                                            
rJMSF006K13-          ATGCGTCTGTCTGGAAGGTATATCCAACATCAGCAAAGTGTGACTT              
rJMSF018G18-          ATGCGTCTGTCTGGAAGGTATATCCAACATCAGCAAAGTGTGACTTCACTAGTGCAAGAG
JMFN025A19+           ATGCGTCTGTCTGGAAGGTATATCCAACATCAGCAAAGTGTGACTTCACTAGTGCAAGAG
                      ____________________________________________________________
consensus             ATGCGTCTGTCTGGAAGGTATATCCAACATCAGCAAAGTGTGACTTCACTAGTGCAAGAG
 
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rJMSF018G18-          CCTTAGAGCGGTGAGAAATCTTGTTCTTTTCTTCCTTCGCCATCTCGGCATAAGTCTGCT
JMFN025A19+           CCTTAGAGCGGTGAGAAATCTTGTTCTTTTCTTCCTTCGCCATCTCGGCATAAGTCTGCT
                      ____________________________________________________________
consensus             CCTTAGAGCGGTGAGAAATCTTGTTCTTTTCTTCCTTCGCCATCTCGGCATAAGTCTGCT
 
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rJMSF018G18-          CATAGCCATCAGGCTCAAAGATAGGATCCCATCCAAAATCATTTGGTCCCCTCGCTGGAA
JMFN025A19+           CATAGCCATCAGGCTCAAAGATAGGATCCCATCCAAAATCATTTGGTCCCCTCGCTGGAA
                      ____________________________________________________________
consensus             CATAGCCATCAGGCTCAAAGATAGGATCCCATCCAAAATCATTTGGTCCCCTCGCTGGAA
 
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rJMSF018G18-          CAATCTTTCCCAAAGTTTTACCAATAAATGTAATCGGCTCCACATTAGGTCCAATAGCAA
JMFN025A19+           CAATCTTTCCCAAAGTTTTACCAATAAATGTAATCGGCTCCACATTAGGTCCAATAGCAA
JMSF018G18+                  TCCCAAAGTTTTACCAATAAATGTAATCGGCTCCACATTAGGTCCAATAGCAA
                      ____________________________________________________________
consensus             CAATCTTTCCCAAAGTTTTACCAATAAATGTAATCGGCTCCACATTAGGTCCAATAGCAA
 
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rJMSF018G18-          GAGAGAAGATACACATAGCATATGCCGATTTATCCTCATATGCCATTAACAAATTGTTGA
JMFN025A19+           GAGAGAAGATACACATAGCATATGCCGATTTATCCTCATATGCCATTAACAAATTGTTGA
JMSF018G18+           GAGAGAAGATACACATAGCATATGCCGATTTATCCTCATATGCCATTAACAAATTGTTGA
                      ____________________________________________________________
consensus             GAGAGAAGATACACATAGCATATGCCGATTTATCCTCATATGCCATTAACAAATTGTTGA
 
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rJMSF018G18-          GACCTTCATGTCCAGTTTTCTGCAAAAACCACTTGATGTAAGGCCCTGGGAGACCCTTAA
JMFN025A19+           GACCTTCATGTCCAGTTTTCTGCAAAAACCACTTGATGTAAGGCCCTGGGAGACCCTTAA
JMSF018G18+           GACCTTCATGTCCAGTTTTCTGCAAAAACCACTTGATGTAAGGCCCTGGGAGACCCTTAA
                      ____________________________________________________________
consensus             GACCTTCATGTCCAGTTTTCTGCAAAAACCACTTGATGTAAGGCCCTGGGAGACCCTTAA
 
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rJMSF018G18-          GCGCATTGAAACAAAGACAAGTATCCTCCACTAGCACAGGGCCCTTGACCTCTTTAGCAG
JMFN025A19+           GCGCATTGAAACAAAGACAAGTATCCTCCACTAGCACAGGGCCCTTGACCTCTTTAGCAG
JMSF018G18+           GCGCATTGAAACAAAGACAAGTATCCTCCACTAGCACAGGGCCCTTGACCTCTTTAGCAG
                      ____________________________________________________________
consensus             GCGCATTGAAACAAAGACAAGTATCCTCCACTAGCACAGGGCCCTTGACCTCTTTAGCAG
 
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rJMSF018G18-          CGATTCTAGCCTTCTCCTTGGAGATTTCTTCAGGCTCGCCTTGTAGCTCTGGTAGGTCGA
JMFN025A19+           CGATTCTAGCCTTCTCCTTGGAGATTTCTTCAGGCTCGCCTTGTAGCTCTGGTAGGTCGA
JMSF006M15+                              GGAGATTTCTTCAGGCTCGCCTTGTAGCTCTGGTAGGTCGA
JMSF018G18+           CGATTCTAGCCTTCTCCTTGGAGATTTCTTCAGGCTCGCCTTGTAGCTCTGGTAGGTCGA
                      ____________________________________________________________
consensus             CGATTCTAGCCTTCTCCTTGGAGATTTCTTCAGGCTCGCCTTGTAGCTCTGGTAGGTCGA
 
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rJMSF018G18-          GTTTGAGGGACTGGAAAGGAATGGA                                   
JMFN025A19+           GTTTGAGGGACTGGAAAGGAATGGAGGTTCCAAGGATGGCTCGGACCTCCTCTAACTTCT
JMSF006M15+           GTTTGAGGGACTGGAAAGGAATGGAGGTTCCAAGGATGGCTCGGACCTCCTCTAACTTCT
JMSF018G18+           GTTTGAGGGACTGGAAAGGAATGGAGGTTCCAAGGATGGCTCGGACCTCCTCTAACTTCT
                      ____________________________________________________________
consensus             GTTTGAGGGACTGGAAAGGAATGGAGGTTCCAAGGATGGCTCGGACCTCCTCTAACTTCT
 
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JMFN025A19+           TTGCGTTTCCGGTCACGAAAGTCACCGGTCTGGGAAGCACCACCGCCCTTGCCGCCGCCA
JMSF006M15+           TTGCGTTTCCGGTCACGAAAGTCACCGGTCTGGGAAGCACCACCGCCCTTGCCGCCGCCA
JMSF018G18+           TTGCGTTTCCGGTCACGAAAGTCACCGGTCTGGGAAGCACCACCGCCCTTGCCGCCGCCA
                      ____________________________________________________________
consensus             TTGCGTTTCCGGTCACGAAAGTCACCGGTCTGGGAAGCACCACCGCCCTTGCCGCCGCCA
 
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JMFN025A19+           TAATCTCGGGAGTTGATACTGTAACGGAATTCGCGAACGGGAG                 
JMSF006M15+           TAATCTCGGGAGTTGATACTGTAACGAAATTCGCGAACGGGAGATTCTGCTAAACCCTTC
JMSF018G18+           TAATCTCGGGAGTTGATACTGTAACGGAATTCGCGAACGGGAGATTCTGCTAAACCCTTC
                      ____________________________________________________________
consensus             TAATCTCGGGAGTTGATACTGTAACGGAATTCGCGAACGGGAGATTCTGCTAAACCCTTC