Contig 005045:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+                                                              TGACGAAGA
JMSF038K05+                                     CCTCCTATCANTTTTTGAATGGGATTGACGAAGA
                      ____________________________________________________________
consensus                                       CCTCCTATCANTTTTTGAATGGGATTGACGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           AAGAAACGATGGCAAAATATTATTGCCGTAGCAATGGTTACCTGAGGCACTTTAAGTCTC
JMSF038K05+           AAGAAACGATGGCAAAATATTATTGCCGTAGCAATGGTTACCTGAGGCACTTTAAGTCTC
                      ____________________________________________________________
consensus             AAGAAACGATGGCAAAATATTATTGCCGTAGCAATGGTTACCTGAGGCACTTTAAGTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           ATGCCCAAATCTTGTAAAAATGTACAATATGATTTGCGCAGGTAAGTCTCCTTCTTTAAA
JMSF038K05+           ATGCCCAAATCTTGTAAAAATGTACAATATGATTTGCGCAGGTAAGTCTCCTTCTTTAAA
                      ____________________________________________________________
consensus             ATGCCCAAATCTTGTAAAAATGTACAATATGATTTGCGCAGGTAAGTCTCCTTCTTTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           TCAATGCCATCTTGTCTAGAGGGAGAATTTTCTTCAATCTCCCTCCTAGAGAAATACCAA
JMSF038K05+           TCAATGCCATCTTGTCTAGAGGGAGAATTTTCTTCAATCTCCCTCCTAGAGAAATACCAA
                      ____________________________________________________________
consensus             TCAATGCCATCTTGTCTAGAGGGAGAATTTTCTTCAATCTCCCTCCTAGAGAAATACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           CTGCCACCACCTTCCTCAGTGTTTTCTTGAGATCCAGCATCATATGAACCATGGTGCGAG
JMSF038K05+           CTGCCACCACCTTCCTCAGTGTTTTCTTGAGATCCAGCATCATATGAACCATGGTGCGAG
                      ____________________________________________________________
consensus             CTGCCACCACCTTCCTCAGTGTTTTCTTGAGATCCAGCATCATATGAACCATGGTGCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           GGATCAGCAGCCAATGTAGAAGCCATAGACAACTCTTAAATAGCGTATCTTGCAGACTAA
JMSF038K05+           GGATCAGCAGCCAATGTAGAAGCCATAGACAACTCTTAAATAGCGTATCTTGCAGACTAA
                      ____________________________________________________________
consensus             GGATCAGCAGCCAATGTAGAAGCCATAGACAACTCTTAAATAGCGTATCTTGCAGACTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           CCACCGACGATCAGAGTAAACAAAAGTTACTCTAATACGAAAGAAACTGTTTTTAGGTGT
JMSF038K05+           CCACCGACGATCAGAGTAAACAAAAGTTACTCTAATACGAAAGAAACTGTTTTTAGGTGT
                      ____________________________________________________________
consensus             CCACCGACGATCAGAGTAAACAAAAGTTACTCTAATACGAAAGAAACTGTTTTTAGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           TTACTTTTACTCACAAAGAATAAAAATGACTGAGGGGGTCAAAATTTAGGGTTTTCCCCA
JMSF038K05+           TTACTTTTACTCACAAAGAATAAAAATGACTGAGGGGGTCAAAATTTAGGGTTTTCCCCA
                      ____________________________________________________________
consensus             TTACTTTTACTCACAAAGAATAAAAATGACTGAGGGGGTCAAAATTTAGGGTTTTCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           AAATTAAGCAAAACCTGACTGAGGTCAGCAAAAATACAATCGAAGATAATTGAGCCCCGA
JMSF038K05+           AAATTAAGCAAAACCTGACTGAGGTCAGCAAAAATACAATCGAAGATAATTGAGCCCCGA
JMSF001B22+                       ACCTGACTGAGGTCAGCAAAAATACAATCGAAGATAATTGAGCCCCGA
JMSF018G09+                       ACCTGACTGAGGTCAGCAAAAATACAATCGAAGATAATTGAGCCCCGA
                      ____________________________________________________________
consensus             AAATTAAGCAAAACCTGACTGAGGTCAGCAAAAATACAATCGAAGATAATTGAGCCCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           AAGAAACCCAAAATCGAAGCCCTAATAACAAACCAAAAAAAATGATTTAAAAAGAATATA
JMSF038K05+           AAGAAACCCAAAATCGAAGCCCTAATAACAAACCAAAAAAAATGATTTAAAAAGAATATA
JMSF001B22+           AAGAAACCCAAAATCGAAGCCCTAATAACAAACCAAAAAAAATGATTTAAAAAGAATATA
JMSF018G09+           AAGAAACCCAAAATCGAAGCCCTAATAACAAACCAAAAAAAATGATTTAAAAAGAATATA
                      ____________________________________________________________
consensus             AAGAAACCCAAAATCGAAGCCCTAATAACAAACCAAAAAAAATGATTTAAAAAGAATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           AGTGTTCAGACGCCTTCTGTGCGGAGCAGATAGCGTCTTCTTCTTCAACTTTACGCCTGC
JMSF038K05+           AGTGTTCAGACGCCTTCTGTGCGGAGCAGATAGCGTCTTCTTCTTCAACTTTACGCCTGC
JMSF001B22+           AGTGTTCAGACGCCTTCTGTGCGGAGCAGATAGCGTCTTCTTCTTCAACTTTACGCCTGC
JMSF018G09+           AGTGTTCAGACGCCTTCTGTGCGGAGCAGATAGCGTCTTCTTCTTCAACTTTACGCCTGC
                      ____________________________________________________________
consensus             AGTGTTCAGACGCCTTCTGTGCGGAGCAGATAGCGTCTTCTTCTTCAACTTTACGCCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           GACATTGAAGCCAGCAATCGATTGATTGAAGCGAGCGGTAGGGAGCTGCGGAGTGGGTGA
JMSF038K05+           GACATTGAAGCCAGCAATCGATTGATTGAAGCGAGCGGTAGGGAGCTGCGGAGTGGGTGA
JMSF001B22+           GACATTGAAGCCAGCAATCGATTGATTGAAGCGAGCGGTAGGGAGCTGCGGAGTGGGTGA
JMSF018G09+           GACATTGAAGCCAGCAATCGATTGATTGAAGCGAGCGGTAGGGAGCTGCGGAGTGGGTGA
                      ____________________________________________________________
consensus             GACATTGAAGCCAGCAATCGATTGATTGAAGCGAGCGGTAGGGAGCTGCGGAGTGGGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF037D08+           C                                                           
JMSF038K05+           C                                                           
JMSF001B22+           C                                                           
JMSF018G09+           CTCGACTCGCTCGAGGGATAGAAGCAAGGGACAAATATACTGAGACGGGATAGAATTAAC
                      ____________________________________________________________
consensus             CTCGACTCGCTCGAGGGATAGAAGCAAGGGACAAATATACTGAGACGGGATAGAATTAAC