Contig 005039:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013K01Sequence574005039 (9)ref|XP_009589533.1|113PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]677005039 (9)ref|XP_009589533.1|137PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]
JMFF040E23Sequence563005039 (9)ref|XP_009589533.1|113PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]715005039 (9)ref|XP_009589533.1|136PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]
JMFF042F15Sequence611005039 (9)ref|XP_009589533.1|116PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]580005039 (9)ref|XP_009589533.1|122PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]
JMFN008A21Sequence623005039 (9)ref|XP_009589533.1|137PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]
JMFS081G11Sequence627005039 (9)ref|XP_009589533.1|91.7PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]
JMSF017F19Sequence249005039 (9)795019288ref|XP_009589533.1|117PREDICTED: uncharacterized protein LOC104086890 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF042F15-                                               AGAAAATAAAATAACGTTATTTT
rJMFF013K01-                                                            ACGTTATTTT
rJMFF040E23-                                                            ACGTTATTTT
                      ____________________________________________________________
consensus                                                  AGAAAATAAAATAACGTTATTTT
 
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rJMFF042F15-          TTCTACAAATATATTTATGACAGGAGCACAATAGTCAAACAAGTGAACATTTCATAGTCT
rJMFF013K01-          TTCTACAAATATATTTATGACAGGAGCACAATAGTCAAACAAGTGAACATTTCATAGTCT
JMFN008A21+                                                    AGTGAACATTTCATAGTCT
rJMFF040E23-          TTCTACAAATATATTTATGACAGGAGCACAATAGTCAAACAAGTGAACATTTCATAGTCT
                      ____________________________________________________________
consensus             TTCTACAAATATATTTATGACAGGAGCACAATAGTCAAACAAGTGAACATTTCATAGTCT
 
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rJMFF042F15-          ACTCTGTCTACAAAACAAGAAACCATTTTTCATTAATCAAAATTAGGGTTTCTTCTCCTC
rJMFF013K01-          ACTCTGTCTACAAAACAAGAAACCATTTTTCATTAATCAAAATTAGGGTTTCTTCTCCTC
JMFN008A21+           ACTCTGTCTACAAAACAAGAAACCATTTTTCATTAATCAAAATTAGGGTTTCTTCTCCTC
rJMFF040E23-          ACTCTGTCTACAAAACAAGAAACCATTTTTCATTAATCAAAATTAGGGTTTCTTCTCCTC
                      ____________________________________________________________
consensus             ACTCTGTCTACAAAACAAGAAACCATTTTTCATTAATCAAAATTAGGGTTTCTTCTCCTC
 
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rJMFF042F15-          AACCGGCGATGTCTTTGCAGCTGGCTGGTTAGATCCGTGGTGAAGGAACTCCTCCAATTT
rJMFF013K01-          AACCGGCGATGTCTTTGCAGCTGGCTGGTTAGATCCGTGGTGAAGGAACTCCTCCAATTT
JMFN008A21+           AACCGGCGATGTCTTTGCAGCTGGCTGGTTAGATCCGTGGTGAAGGAACTCCTCCAATTT
rJMFF040E23-          AACCGGCGATGTCTTTGCAGCTGGCTGGTTAGATCCGTGGTGAAGGAACTCCTCCAATTT
                      ____________________________________________________________
consensus             AACCGGCGATGTCTTTGCAGCTGGCTGGTTAGATCCGTGGTGAAGGAACTCCTCCAATTT
 
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rJMFF042F15-          ATCATCCAATTCCTCCACCTTGTCCATAAGGTCTTCAACTATCTGAGCATCTTTTGCAGT
rJMFF013K01-          ATCATCCAATTCCTCCACCTTGTCCATAAGGTCTTCAACTATCTGAGCATCTTTTGCAGT
JMFN008A21+           ATCATCCAATTCCTCCACCTTGTCCATAAGGTCTTCAACTATCTGAGCATCTTTTGCAGT
rJMFF040E23-          ATCATCCAATTCCTCCACCTTGTCCATAAGGTCTTCAACTATCTGAGCATCTTTTGCAGT
JMFF042F15+                                                                      T
                      ____________________________________________________________
consensus             ATCATCCAATTCCTCCACCTTGTCCATAAGGTCTTCAACTATCTGAGCATCTTTTGCAGT
 
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rJMFF042F15-          TTCCTCGGCAACATGTTCGATGGCCTCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
rJMFF013K01-          TTCCTCGGCAACATGTTCGATGGCCTCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
JMFN008A21+           TTCCTCGGCAACATGTTCGATGGCCTCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
rJMFF040E23-          TTCCTCGGCAACATGTTCGATGGCCTCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
JMFF042F15+           TTCCTCGGCAACATGTTCGATGGCCTCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
JMFF013K01+                                    TCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
JMFF040E23+                                               TTTGAGTTTGCCGGCCGGAAGATT
                      ____________________________________________________________
consensus             TTCCTCGGCAACATGTTCGATGGCCTCCACGATGTCTTTGAGTTTGCCGGCCGGAAGATT
 
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rJMFF042F15-          CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
rJMFF013K01-          CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
JMFN008A21+           CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
rJMFF040E23-          CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
JMFF042F15+           CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
JMFF013K01+           CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
JMFF040E23+           CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
                      ____________________________________________________________
consensus             CTCCTTGAAACCCTCCGCCGCCTTGTCGACTTCGTGCGCCACGTTCCCTACCACATCCGC
 
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rJMFF042F15-          CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
rJMFF013K01-          CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
JMFN008A21+           CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
rJMFF040E23-          CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
JMFF042F15+           CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
JMFF013K01+           CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
JMFS081G11+                                                 TTGACAATGTCAATAATCTTGC
JMFF040E23+           CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
                      ____________________________________________________________
consensus             CACCTTCTCCACCGTCTCCGCCGCCGCCTCAACTTGCTTTGACAATGTCAATAATCTTGC
 
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rJMFF042F15-          TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
rJMFF013K01-          TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
JMFN008A21+           TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
rJMFF040E23-          TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
JMFF042F15+           TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
JMFF013K01+           TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
JMFS081G11+           TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
JMFF040E23+           TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
                      ____________________________________________________________
consensus             TGTAATCAAAGGTATTGCCACACACAATCCCGTAGCCCACGCCAACCAAGAATTATCTTC
 
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rJMFF042F15-          AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
rJMFF013K01-          AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
JMFN008A21+           AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
rJMFF040E23-          AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
JMFF042F15+           AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
JMFF013K01+           AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
JMFS081G11+           AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
JMFF040E23+           AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
                      ____________________________________________________________
consensus             AGAAGATGGCAAAAACGGAAGAAACCCCGAAAGAAAATCCCCAGCAACTTCCGGAGTGGC
 
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rJMFF042F15-          ATGAACAACCAAGGCC                                            
rJMFF013K01-          ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
JMFN008A21+           ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
rJMFF040E23-          ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
JMFF042F15+           ATGAACAACCAAGG-CCGTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
JMFF013K01+           ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
JMFS081G11+           ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
JMFF040E23+           ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
JMSF017F19+                                                              TGGGAACGA
                      ____________________________________________________________
consensus             ATGAACAACCAAGGCCCTTGATCTTTTCTTAGCAGAGGTTCTGAGGTTGCCTGGGAACGA
 
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rJMFF013K01-          NGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
JMFN008A21+           GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
rJMFF040E23-          GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
JMFF042F15+           GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
JMFF013K01+           GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
JMFS081G11+           GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
JMFF040E23+           GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
JMSF017F19+           GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
                      ____________________________________________________________
consensus             GGATTGATGATATTGAGGCTTTTGTTGAGATATGATTGTTGGGTTAACAAAACCCAGTGT
 
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rJMFF013K01-          CTGA                                                        
JMFN008A21+           CTGA                                                        
rJMFF040E23-          CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAA                 
JMFF042F15+           CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAAGAAAGAAGAGATGATGC
JMFF013K01+           CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAAGAAAGAAGAGATGATGC
JMFS081G11+           CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAAGAAAGAAGAGATGATGC
JMFF040E23+           CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAAGAAAGAAGAGATGATGC
JMSF017F19+           CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAAGAAAGAAGAGATGATGC
                      ____________________________________________________________
consensus             CTGAGATGTATTTGTGGAACTGGTATGGGAGATGGAGATGGAAGAAAGAAGAGATGATGC
 
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JMFF042F15+           TGCCATGGCGATCGAACCAAGGTTTTCACTTTCTTCCCAAAACAAACACTTTTATTATAA
JMFF013K01+           TGCCATGGCGATCGAACCAAGGTTTTCACTTTCTTCCCAAAACAAACACTTTTATTATAA
JMFS081G11+           TGCCATGGCGATCGAACCAAGGTTTTCACTTTCTTCCCAAAACAAACACTTTTATTATAA
JMFF040E23+           TGCCATGGCGATCGAACCAAGGTTTTCACTTTCTTCCCAAAACAAACACTTTTATTATAA
JMSF017F19+           TGCCATGGCGATCGAACCAAGGTTTTCACTTTCTTCCCAAAACAAACACTTTTATTATAA
                      ____________________________________________________________
consensus             TGCCATGGCGATCGAACCAAGGTTTTCACTTTCTTCCCAAAACAAACACTTTTATTATAA
 
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JMFF042F15+           TCTACCCGTTGAAGAACAGTCCTTATGTATATTAAAAAACAAGTTGGTAGAGATA     
JMFF013K01+           TCTACCCGTTGAAGAACAGTCCTTATGTATATTAAAAAACAAGTTGGTAGAGATA     
JMFS081G11+           TCTACCCGTTGAAGAACAGTCCTTATGTATATTAAA                        
JMFF040E23+           TCTACCCGTTGAAGAACAGTCCTTATGTATATTAAAAAACAAGTTGGTAGAGATA     
JMSF017F19+           TCTACCCGTTGAAGAACAGTCCTTATGTATATTAAAAAACAAGTTGGTAGAGATAAGATC
                      ____________________________________________________________
consensus             TCTACCCGTTGAAGAACAGTCCTTATGTATATTAAAAAACAAGTTGGTAGAGATAAGATC