Contig 005027:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS098B09Sequence626005027 (2)ref|XP_009763485.1|2e-110PREDICTED: transcriptional corepressor LEUNIG-like [Nicotiana sylvestris]
JMSF015J10Sequence557005027 (2)ref|XP_011080189.1|6e-82PREDICTED: transcriptional corepressor LEUNIG-like [Sesamum indicum] ref|XP_0110597014996ref|XP_009763485.1|7e-71PREDICTED: transcriptional corepressor LEUNIG-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS098B09+                                          GAGTTGAATTCGGCCGGAACCGGACATCA
                      ____________________________________________________________
consensus                                            GAGTTGAATTCGGCCGGAACCGGACATCA
 
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JMFS098B09+           GTTATTAAGTATTGATGCTCTTCTGGGGTCATCTCTGTTTGCAAAGTGTCCATGTTCCAA
                      ____________________________________________________________
consensus             GTTATTAAGTATTGATGCTCTTCTGGGGTCATCTCTGTTTGCAAAGTGTCCATGTTCCAA
 
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JMFS098B09+           ATTACAGCCTTCTTGTCATGTCCAGCACTGGCTAACAACTTCCCATCCGAAGAAAAATGA
                      ____________________________________________________________
consensus             ATTACAGCCTTCTTGTCATGTCCAGCACTGGCTAACAACTTCCCATCCGAAGAAAAATGA
 
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JMFS098B09+           CAGCAAGTTACTTTATTTCTTGTTCGAATACAACCAACTTCCCCAAAGGAAAACCCTTTA
JMSF015J10+                                                      CAAAGGAAAACCCTTTA
                      ____________________________________________________________
consensus             CAGCAAGTTACTTTATTTCTTGTTCGAATACAACCAACTTCCCCAAAGGAAAACCCTTTA
 
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JMFS098B09+           GGCTCTGGTTTGTGCTCAGTGAGAGATTGTTTCAGTGTGCCATATATATTTCCATCTCCC
JMSF015J10+           GGCTCTGGTTTGTGCTCAGTGAGAGATTGTTTCAGTGTGCCATATATATTTCCATCTCCC
                      ____________________________________________________________
consensus             GGCTCTGGTTTGTGCTCAGTGAGAGATTGTTTCAGTGTGCCATATATATTTCCATCTCCC
 
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JMFS098B09+           CCATCATGTGACAAAAAAGATTCCACATTATCTTCCAGAGAACCAATGTCTCCAAAATTC
JMSF015J10+           CCATCATGTGACAAAAAAGATTCCACATTATCTTCCAGAGAACCAATGTCTCCAAAATTC
                      ____________________________________________________________
consensus             CCATCATGTGACAAAAAAGATTCCACATTATCTTCCAGAGAACCAATGTCTCCAAAATTC
 
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JMFS098B09+           TCCAAGTCATCCAGCTGATTCGTAGATGATGCAATACCACCAGTTCCCTCAGCACCATAC
JMSF015J10+           TCCAAGTCATCCAGCTGATTCGTAGATGATGCAATACCACCAGTTCCCTCAGCACCATAC
                      ____________________________________________________________
consensus             TCCAAGTCATCCAGCTGATTCGTAGATGATGCAATACCACCAGTTCCCTCAGCACCATAC
 
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JMFS098B09+           ATGATCAAGCTCTTTGAAACACTGTTGACATGTTGCATGCTACTAGCAGTGCCCATTGCA
JMSF015J10+           ATGATCAAGCTCTTTGAAACACTGTTGACATGTTGCATGCTACTAGCAGTGCCCATTGCA
                      ____________________________________________________________
consensus             ATGATCAAGCTCTTTGAAACACTGTTGACATGTTGCATGCTACTAGCAGTGCCCATTGCA
 
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JMFS098B09+           TCACCAGGTGTGTGTGTCGATGGTGGTGAATTTGGAGAAGGACCAACTGTATTCCCAGTG
JMSF015J10+           TCACCAGGTGTGTGTGTCGATGGTGGTGAATTTGGAGAAGGACCAACTGTATTCCCAGTG
                      ____________________________________________________________
consensus             TCACCAGGTGTGTGTGTCGATGGTGGTGAATTTGGAGAAGGACCAACTGTATTCCCAGTG
 
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JMFS098B09+           CCTGTACTATTGGCAGGTCCAGACGAGGAATGCTGCTTCCTTTTCCTGTTAGTCTGCTGC
JMSF015J10+           CCTGTACTATTGGCAGGTCCAGACGAGGAATGCTGCTTCCTTTTCCTGTTAGTCTGCTGC
                      ____________________________________________________________
consensus             CCTGTACTATTGGCAGGTCCAGACGAGGAATGCTGCTTCCTTTTCCTGTTAGTCTGCTGC
 
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JMFS098B09+           AATTGCTGTTGCTGTTGCAGTTGGTCCTGTTGTTGAGAGGAAGATTGCTGCATTTGG   
JMSF015J10+           AATTGCTGTTGCTGTTGCAGTTGGTCCTGTTGTTGAGAGGAAGATTGCTGCATTTGGGGC
                      ____________________________________________________________
consensus             AATTGCTGTTGCTGTTGCAGTTGGTCCTGTTGTTGAGAGGAAGATTGCTGCATTTGGGGC
 
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JMSF015J10+           ATCTTCATCTTCGGGGAATTTGATTGCACAGGAGAACATATAGATCCATCATTTCTTGGG
                      ____________________________________________________________
consensus             ATCTTCATCTTCGGGGAATTTGATTGCACAGGAGAACATATAGATCCATCATTTCTTGGG
 
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JMSF015J10+           GGTTGACCATCTTTTGGATTAAAGTTACCCCTTGGTAATCCACCAAAACCATAATTAGGC
                      ____________________________________________________________
consensus             GGTTGACCATCTTTTGGATTAAAGTTACCCCTTGGTAATCCACCAAAACCATAATTAGGC