Contig 005024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS004C08Sequence540005024 (10)ref|XP_002510776.1|130RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMFS065F12Sequence627005024 (10)ref|XP_002510776.1|191RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMFS067F10Sequence627005024 (10)ref|XP_002510776.1|191RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMFS122B11Sequence288005024 (10)ref|XP_004506367.1|9e-34PREDICTED: RNA-binding protein Musashi homolog Rbp6-like isoform X2 [Cicer arie
JMFS132C08Sequence621005024 (10)ref|XP_002510776.1|150RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMSF010C18Sequence296005024 (10)
JMSF015E22Sequence212005024 (10)688002599 (3)ref|XP_009625493.1|152PREDICTED: uncharacterized protein LOC104116360 [Nicotiana tomentosiformis]
JMSF018N17Sequence402005024 (10)789011323 (3)ref|XP_002510776.1|74.7RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMSF023H11Sequence432005024 (10)750011323 (3)ref|XP_002510776.1|85.1RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1
JMSF034F15Sequence414005024 (10)701011323 (3)ref|XP_002510776.1|67.4RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS122B11+ GTTGG
                      ____________________________________________________________
consensus GTTGG
 
. : . : . : . : . : . :
JMFS122B11+ ATGGCATAATGGGAAAAGTTTGATGGAGAAGGAAAAGCTGCATCAGCTCCGCCAAACCCT
                      ____________________________________________________________
consensus ATGGCATAATGGGAAAAGTTTGATGGAGAAGGAAAAGCTGCATCAGCTCCGCCAAACCCT
 
. : . : . : . : . : . :
JMFS122B11+ CCCTGAAAAGCACTCATTACCATAAAGTTCCTCCCCCCTCCTCCTCCTCCATGTTTATTA
JMFS065F12+ A
                      ____________________________________________________________
consensus CCCTGAAAAGCACTCATTACCATAAAGTTCCTCCCCCCTCCTCCTCCTCCATGTTTATTA
 
. : . : . : . : . : . :
JMFS122B11+ GGGGTTGAAGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATTGCAGTTAGCCCTTCTG
JMFS065F12+ GGGGTTGAAGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATGNCAGTTAGCCCTTCTG
JMFS067F10+ AGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATTGCAGTTAGCCCTTCTG
                      ____________________________________________________________
consensus GGGGTTGAAGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATTGCAGTTAGCCCTTCTG
 
. : . : . : . : . : . :
JMFS122B11+ CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS065F12+ CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS004C08+ CAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS067F10+ CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS132C08+ CAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
                      ____________________________________________________________
consensus CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
 
. : . : . : . : . : . :
JMFS122B11+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAG
JMFS065F12+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
JMFS004C08+ GTTACAAATCCATAGCCTTTGGTCTGGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
JMFS067F10+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
JMFS132C08+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
                      ____________________________________________________________
consensus GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
 
. : . : . : . : . : . :
JMFS065F12+ AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
JMFS004C08+ AAGATTTCGCCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
JMFS067F10+ AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
JMFS132C08+ AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
                      ____________________________________________________________
consensus AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
 
. : . : . : . : . : . :
JMFS065F12+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
JMFS004C08+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
JMFS067F10+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
JMSF034F15+ TAGTGTATGTGGTGTCNCCNAACTGCCCACTCACGTTATTG
JMFS132C08+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
                      ____________________________________________________________
consensus AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
 
. : . : . : . : . : . :
JMFS065F12+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMFS004C08+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMFS067F10+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMSF034F15+ TTGCTGCTGCTCTNGTTATTAGATGCTGCNGGAACTGGGTTCATNTTCTCTCTCTCTCTC
JMFS132C08+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMSF018N17+ TCTCTCTCTCTCTC
JMSF023H11+ TCTCTCTCTCTC
                      ____________________________________________________________
consensus TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
 
. : . : . : . : . : . :
JMFS065F12+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMFS004C08+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMFS067F10+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF034F15+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF010C18+ AGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMFS132C08+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF018N17+ TCTCTCTCTCTACANTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF023H11+ TCTCTCTCTCTACANTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACANA
                      ____________________________________________________________
consensus TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
 
. : . : . : . : . : . :
JMFS065F12+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMFS004C08+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMFS067F10+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF034F15+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF010C18+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMFS132C08+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF018N17+ AAAGACANGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF023H11+ AAAGACANGGTTGTTTGTTTACANCTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
                      ____________________________________________________________
consensus AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
 
. : . : . : . : . : . :
JMFS065F12+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMFS004C08+ AGAACTGAATGAATAACATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMFS067F10+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMSF034F15+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMSF010C18+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMFS132C08+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMSF018N17+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACANTGGTCCAAACTGGGAAA
JMSF023H11+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACANTGGTCCAAAATGGGAAA
                      ____________________________________________________________
consensus AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
 
. : . : . : . : . : . :
JMFS065F12+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMFS004C08+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMFS067F10+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF034F15+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF010C18+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMFS132C08+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF018N17+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF023H11+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF015E22+ GGACTNGATTCTGGGTTGTGTTAATTTGGAGG
                      ____________________________________________________________
consensus TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
 
. : . : . : . : . : . :
JMFS065F12+ GAGAAGGGGATGGAGAGTAGAGAGAA
JMFS004C08+ GAGAAGGGGATGGAGAGTAGAGAGAAG
JMFS067F10+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAA
JMSF034F15+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF010C18+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMFS132C08+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF018N17+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF023H11+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF015E22+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
                      ____________________________________________________________
consensus GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
 
. : . : . : . : . : . :
JMSF034F15+ GGAAAAA
JMSF010C18+ GGAAAAACAG
JMFS132C08+ GGAAAAACAGGAGGGAAGAGAAACC
JMSF018N17+ GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
JMSF023H11+ GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
JMSF015E22+ GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
                      ____________________________________________________________
consensus GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
 
. : . : . : . : . : . :
JMSF018N17+ AAACAGGAAAAGAATTATTATTAT
JMSF023H11+ AAACAGGAAAAGAATTATTATTATAGTAATAGAAAAAGAAGGAAAAGATGAAAAAAG
JMSF015E22+ AAACAGGAAAAGAATTATTATTATAGTAATAGAAAAAGAAGGAAAAGATGAAAAAAGCTC
                      ____________________________________________________________
consensus AAACAGGAAAAGAATTATTATTATAGTAATAGAAAAAGAAGGAAAAGATGAAAAAAGCTC