| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS004C08 | Sequence | 540 | 005024 (10) | ref|XP_002510776.1| | 130 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||||
| JMFS065F12 | Sequence | 627 | 005024 (10) | ref|XP_002510776.1| | 191 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||||
| JMFS067F10 | Sequence | 627 | 005024 (10) | ref|XP_002510776.1| | 191 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||||
| JMFS122B11 | Sequence | 288 | 005024 (10) | ref|XP_004506367.1| | 9e-34 | PREDICTED: RNA-binding protein Musashi homolog Rbp6-like isoform X2 [Cicer arie | |||||
| JMFS132C08 | Sequence | 621 | 005024 (10) | ref|XP_002510776.1| | 150 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||||
| JMSF010C18 | Sequence | 296 | 005024 (10) | ||||||||
| JMSF015E22 | Sequence | 212 | 005024 (10) | 688 | 002599 (3) | ref|XP_009625493.1| | 152 | PREDICTED: uncharacterized protein LOC104116360 [Nicotiana tomentosiformis] | |||
| JMSF018N17 | Sequence | 402 | 005024 (10) | 789 | 011323 (3) | ref|XP_002510776.1| | 74.7 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||
| JMSF023H11 | Sequence | 432 | 005024 (10) | 750 | 011323 (3) | ref|XP_002510776.1| | 85.1 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||
| JMSF034F15 | Sequence | 414 | 005024 (10) | 701 | 011323 (3) | ref|XP_002510776.1| | 67.4 | RNA-binding region-containing protein, putative [Ricinus communis] gb|EEF52963.1 | |||
This contig is upended
. : . : . : . : . : . :
JMFS122B11+ GTTGG
____________________________________________________________
consensus GTTGG
. : . : . : . : . : . :
JMFS122B11+ ATGGCATAATGGGAAAAGTTTGATGGAGAAGGAAAAGCTGCATCAGCTCCGCCAAACCCT
____________________________________________________________
consensus ATGGCATAATGGGAAAAGTTTGATGGAGAAGGAAAAGCTGCATCAGCTCCGCCAAACCCT
. : . : . : . : . : . :
JMFS122B11+ CCCTGAAAAGCACTCATTACCATAAAGTTCCTCCCCCCTCCTCCTCCTCCATGTTTATTA
JMFS065F12+ A
____________________________________________________________
consensus CCCTGAAAAGCACTCATTACCATAAAGTTCCTCCCCCCTCCTCCTCCTCCATGTTTATTA
. : . : . : . : . : . :
JMFS122B11+ GGGGTTGAAGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATTGCAGTTAGCCCTTCTG
JMFS065F12+ GGGGTTGAAGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATGNCAGTTAGCCCTTCTG
JMFS067F10+ AGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATTGCAGTTAGCCCTTCTG
____________________________________________________________
consensus GGGGTTGAAGGCTTGGATCTCTGAACACCCAAGGAAGCAAGATTGCAGTTAGCCCTTCTG
. : . : . : . : . : . :
JMFS122B11+ CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS065F12+ CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS004C08+ CAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS067F10+ CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
JMFS132C08+ CAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
____________________________________________________________
consensus CCATCAATCACTGGTGCAGCGTCAACACAAGCTCTCATGGCTGCCTCTGGATCGCGAAAA
. : . : . : . : . : . :
JMFS122B11+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAG
JMFS065F12+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
JMFS004C08+ GTTACAAATCCATAGCCTTTGGTCTGGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
JMFS067F10+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
JMFS132C08+ GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
____________________________________________________________
consensus GTTACAAATCCATAGCCTTTGGATCTGGCAGTAGCCTTGTCAGTGATGACAACAGCCTCC
. : . : . : . : . : . :
JMFS065F12+ AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
JMFS004C08+ AAGATTTCGCCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
JMFS067F10+ AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
JMFS132C08+ AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
____________________________________________________________
consensus AAGATTTCACCGAACTGTTCAAAGTAGTTCTTCATGGTGTCCTTGTGAGTCTCCCACGCA
. : . : . : . : . : . :
JMFS065F12+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
JMFS004C08+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
JMFS067F10+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
JMSF034F15+ TAGTGTATGTGGTGTCNCCNAACTGCCCACTCACGTTATTG
JMFS132C08+ AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
____________________________________________________________
consensus AGCCCACCAACAAACACCTTAGTGTATGTGGTGTCACCGAACTGCCCACTCATGTTATTG
. : . : . : . : . : . :
JMFS065F12+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMFS004C08+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMFS067F10+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMSF034F15+ TTGCTGCTGCTCTNGTTATTAGATGCTGCNGGAACTGGGTTCATNTTCTCTCTCTCTCTC
JMFS132C08+ TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
JMSF018N17+ TCTCTCTCTCTCTC
JMSF023H11+ TCTCTCTCTCTC
____________________________________________________________
consensus TTGCTGCTGCTCTTGTTATTAGATGCTGCTGGAACTGGGTTCATCTTCTCTCTCTCTCTC
. : . : . : . : . : . :
JMFS065F12+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMFS004C08+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMFS067F10+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF034F15+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF010C18+ AGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMFS132C08+ TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF018N17+ TCTCTCTCTCTACANTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
JMSF023H11+ TCTCTCTCTCTACANTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACANA
____________________________________________________________
consensus TCTCTCTCTCTACAGTAGCTATATATATATATATGCTAGTAGGTTAACCTTAGAAACAAA
. : . : . : . : . : . :
JMFS065F12+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMFS004C08+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMFS067F10+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF034F15+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF010C18+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMFS132C08+ AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF018N17+ AAAGACANGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
JMSF023H11+ AAAGACANGGTTGTTTGTTTACANCTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
____________________________________________________________
consensus AAAGACAAGGTTGTTTGTTTACAACTTGTGCGCTAGCTAGCTAGCTGCTACTTTGATCTA
. : . : . : . : . : . :
JMFS065F12+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMFS004C08+ AGAACTGAATGAATAACATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMFS067F10+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMSF034F15+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMSF010C18+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMFS132C08+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
JMSF018N17+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACANTGGTCCAAACTGGGAAA
JMSF023H11+ AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACANTGGTCCAAAATGGGAAA
____________________________________________________________
consensus AGAACTGAATGAATAAGATGATCGGTTAGAGGGATTGAGACAGTGGTCCAAACTGGGAAA
. : . : . : . : . : . :
JMFS065F12+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMFS004C08+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMFS067F10+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF034F15+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF010C18+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMFS132C08+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF018N17+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF023H11+ TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
JMSF015E22+ GGACTNGATTCTGGGTTGTGTTAATTTGGAGG
____________________________________________________________
consensus TTCAACTTGAATTGTATGGATCTCGAAGGGACTGGATTCTGGGTTGTGTTAATTTGGAGG
. : . : . : . : . : . :
JMFS065F12+ GAGAAGGGGATGGAGAGTAGAGAGAA
JMFS004C08+ GAGAAGGGGATGGAGAGTAGAGAGAAG
JMFS067F10+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAA
JMSF034F15+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF010C18+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMFS132C08+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF018N17+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF023H11+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
JMSF015E22+ GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
____________________________________________________________
consensus GAGAAGGGGATGGAGAGTAGAGAGAAGGAGGGAAAGGGATGGGTGGAGAGAGAGAGAGAG
. : . : . : . : . : . :
JMSF034F15+ GGAAAAA
JMSF010C18+ GGAAAAACAG
JMFS132C08+ GGAAAAACAGGAGGGAAGAGAAACC
JMSF018N17+ GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
JMSF023H11+ GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
JMSF015E22+ GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
____________________________________________________________
consensus GGAAAAACAGGAGGGAAGAGAAACCAAAAACCAGATGGATATAGAGAGAGAGAGAGAGAG
. : . : . : . : . : . :
JMSF018N17+ AAACAGGAAAAGAATTATTATTAT
JMSF023H11+ AAACAGGAAAAGAATTATTATTATAGTAATAGAAAAAGAAGGAAAAGATGAAAAAAG
JMSF015E22+ AAACAGGAAAAGAATTATTATTATAGTAATAGAAAAAGAAGGAAAAGATGAAAAAAGCTC
____________________________________________________________
consensus AAACAGGAAAAGAATTATTATTATAGTAATAGAAAAAGAAGGAAAAGATGAAAAAAGCTC