Contig 005021:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017E15Sequence592005021 (7)ref|XP_009803019.1|7e-75PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]690012476 (7)ref|XP_006365488.1|1e-72PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFF039F19Sequence512005021 (7)ref|XP_009803019.1|1e-62PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]646012476 (7)ref|XP_006365488.1|3e-86PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFF050A24Sequence586005021 (7)ref|XP_009803019.1|1e-74PREDICTED: long chain acyl-CoA synthetase 2 isoform X1 [Nicotiana sylvestris]618012476 (7)ref|XP_006365488.1|2e-68PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMFS037B07Sequence608005021 (7)ref|XP_009618633.1|2e-60PREDICTED: long chain acyl-CoA synthetase 2 [Nicotiana tomentosiformis]
JMFS074B04Sequence623005021 (7)ref|XP_009803020.1|2e-108PREDICTED: long chain acyl-CoA synthetase 2 isoform X2 [Nicotiana sylvestris]
JMSF012G07Sequence244005021 (7)ref|XP_009803020.1|1e-24PREDICTED: long chain acyl-CoA synthetase 2 isoform X2 [Nicotiana sylvestris]720012476 (7)ref|XP_006365488.1|1e-110PREDICTED: long chain acyl-CoA synthetase 2-like isoform X1 [Solanum tuberosum]
JMSF014P16Sequence461005021 (7)ref|XP_009803020.1|2e-71PREDICTED: long chain acyl-CoA synthetase 2 isoform X2 [Nicotiana sylvestris]781024511gb|ADV02770.1|5e-39WCOR413-like cold acclimation protein [Ipomoea batatas]

Alignment

This contig is upended


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JMFS074B04+                        AAAGCAAGCTACACCGAGTTCTTCAGCTTCCTTTCTCTTCTCGGTGG
                      ____________________________________________________________
consensus                          AAAGCAAGCTACACCGAGTTCTTCAGCTTCCTTTCTCTTCTCGGTGG
 
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JMFS074B04+           AAATATTTCCAAAGCTTACAATAGTTTTCAGATGTGAAATACATCTCGGCAAGCACGTTA
                      ____________________________________________________________
consensus             AAATATTTCCAAAGCTTACAATAGTTTTCAGATGTGAAATACATCTCGGCAAGCACGTTA
 
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JMFS074B04+           ATATAGCCGGTATCTTGTTCTCTTGAACAAACGCTATTGACAGCTCAGCATGGTTTATGA
JMFF039F19+                                     ACAAACGCTATTGACAGCTCAGCATGGTTTATGA
                      ____________________________________________________________
consensus             ATATAGCCGGTATCTTGTTCTCTTGAACAAACGCTATTGACAGCTCAGCATGGTTTATGA
 
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JMFS074B04+           TGAACTCCACTGCATTTGCGCCAAGTGTATCATATAATGGTACATAGGAAATGGCTTGGC
JMFF039F19+           TGAACTCCACTGCATTTGCGCCAAGTGTATCATATAATGGTACATAGGAAATGGCTTGGC
JMSF014P16+                             CGCCAAGTGTATCATATAATGGTACATAGGAAATGGCTTGGC
                      ____________________________________________________________
consensus             TGAACTCCACTGCATTTGCGCCAAGTGTATCATATAATGGTACATAGGAAATGGCTTGGC
 
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JMFS074B04+           TGTTGCAAGCCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
JMFF017E15+                    CCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
JMFF039F19+           TGTTGCAAGCCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
JMFF050A24+                    CCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
JMFS037B07+                    CCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
JMSF014P16+           TGTTGCAAGCCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
                      ____________________________________________________________
consensus             TGTTGCAAGCCTCCATTGCCATTATCCATTCCGGAGAGTTAGTACCATATATGCCACACT
 
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JMFS074B04+           TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAA-TTTTTTTGGCAGTATTG
JMFF017E15+           TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAA-TTTTTTTGGCAGTATTG
JMFF039F19+           TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAA-TTTTTTTGGCAGTATTG
JMFF050A24+           TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAATTTTTTTTGGCAGTATTG
JMFS037B07+           TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAA-TTTTTTTGGCAGTATTG
JMSF014P16+           TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAA-TTTTTTTGGCAGTATTG
                      ____________________________________________________________
consensus             TATCACCAGGGTTGACACCGCATTTTCGGATAGCAGAGCCAA-TTTTTTTGGCAGTATTG
 
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JMFS074B04+           TAAGACTCTTCATATGTCATCCAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
JMFF017E15+           TAAGACTCTTCATATGTCAT-CAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
JMFF039F19+           TAAGACTCTTCATATGTCAT-CAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
JMFF050A24+           TAAGACTCTTCATATGTCATCCAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
JMFS037B07+           TAAGACTCTTCATATGTCATCCAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
JMSF014P16+           TAAGACTCTTCATATGTCATCCAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
                      ____________________________________________________________
consensus             TAAGACTCTTCATATGTCATCCAGACATAGGAACCTGCCTTCTTGTCAGTAATCTGACGG
 
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JMFS074B04+           CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
JMFF017E15+           CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
JMFF039F19+           CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
JMFF050A24+           CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
JMFS037B07+           CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
JMSF012G07+            GACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
JMSF014P16+           CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
                      ____________________________________________________________
consensus             CGACCAAGCATCGGGTTTTTTGGGTATTTCTTGACAGAGTTACTGAAGAAGTCCCAGGGA
 
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JMFS074B04+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
JMFF017E15+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
JMFF039F19+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
JMFF050A24+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
JMFS037B07+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
JMSF012G07+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
JMSF014P16+           GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
                      ____________________________________________________________
consensus             GACTCCAATCCAGCAGGCATTTCCATGAGAGCATCTTTAGCATAAATGCACCTATACACA
 
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JMFS074B04+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
JMFF017E15+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
JMFF039F19+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
JMFF050A24+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
JMFS037B07+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
JMSF012G07+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
JMSF014P16+           GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
                      ____________________________________________________________
consensus             GGTCCTGCAGACGGCTTCCCATCCCCAGCAGGCTTACCTTCTTCAACTTTCACCACATAA
 
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JMFS074B04+           TCTGCCATTTCAGCCTCAAAATCAGAAAACCAGAAAA                       
JMFF017E15+           TCTGCCATTTCAGCCTCAAAATCAGAAATCCAGAAAACTGGGTTCTACCAAAAGTTCACC
JMFF039F19+           TCTGCCATTTCAGCCTCAAAATCAGAAAACCAGAAAACTGGGTTCTACCAAAAGTCCACC
JMFF050A24+           TCTGCCATTTCAGCCTCAAAATCAGAAAACCAGAAAACTGGGTTCTACCAAAAGTCCACC
JMFS037B07+           T                                                           
JMSF012G07+           TCTGCCATTTCAGCCTCAAAATCAGAAAACCAGAAAACTGGGTTCTACCAAAAGTCCAC 
JMSF014P16+           TCTGCCATTTCAGCCTCAAAATCAGAAAACCAGAAAACTGGGTTCTACCAAAAGTCCACC
                      ____________________________________________________________
consensus             TCTGCCATTTCAGCCTCAAAATCAGAAAACCAGAAAACTGGGTTCTACCAAAAGTCCACC