Contig 005005:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF034B01+                                                              CTTCCAGAG
                      ____________________________________________________________
consensus                                                                CTTCCAGAG
 
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JMSF034B01+           CGTCCAAGCACGTTTCCTGGTCTGTTATGGCGGCGCTCAGCCATGTTTTCAGGTCGGCGA
                      ____________________________________________________________
consensus             CGTCCAAGCACGTTTCCTGGTCTGTTATGGCGGCGCTCAGCCATGTTTTCAGGTCGGCGA
 
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JMSF034B01+           TTCTTGCAGAGGAGAGTATCTTGCCGTCTACCCCGTGCACCTCCATGGACGCGATGGAAT
                      ____________________________________________________________
consensus             TTCTTGCAGAGGAGAGTATCTTGCCGTCTACCCCGTGCACCTCCATGGACGCGATGGAAT
 
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JMSF034B01+           CGTTGAGGCGTTGGACTGCATCGTCAAAAACATCCCGGCACACCTCGAATGCCTGCCGGA
                      ____________________________________________________________
consensus             CGTTGAGGCGTTGGACTGCATCGTCAAAAACATCCCGGCACACCTCGAATGCCTGCCGGA
 
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JMSF034B01+           GGTTCTTGTCCTTGGTCCCATTCATCCACCCCGCCGGCCGCGACGCTAGCTCCGCCAAGG
                      ____________________________________________________________
consensus             GGTTCTTGTCCTTGGTCCCATTCATCCACCCCGCCGGCCGCGACGCTAGCTCCGCCAAGG
 
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JMSF034B01+           AGTCAGCCTCCATTTTCAAAGAAAGCACGAAAAGCTTCAAGGGGTCTTTGACCTTTCCTC
                      ____________________________________________________________
consensus             AGTCAGCCTCCATTTTCAAAGAAAGCACGAAAAGCTTCAAGGGGTCTTTGACCTTTCCTC
 
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JMSF034B01+           CGGCGGCAGCCGGCGACAGGCTCTTCATGCACGACTCTTTGTACTCCGTTACGCTACACA
                      ____________________________________________________________
consensus             CGGCGGCAGCCGGCGACAGGCTCTTCATGCACGACTCTTTGTACTCCGTTACGCTACACA
 
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JMSF001L18+                                                                    TCT
JMSF034B01+           TCGCCTCGACAGAGGCCGGAGAACCGGGAGTGGCGTCGTCGCCGGAGCCGCCACTACTCT
JMSF011H11+                                                                    TCT
                      ____________________________________________________________
consensus             TCGCCTCGACAGAGGCCGGAGAACCGGGAGTGGCGTCGTCGCCGGAGCCGCCACTACTCT
 
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JMSF001L18+           TGTTCTTCTTGTGAGCAACAGTCCCGGCAACTACTCCGATGATCAAACCGACGAGAAGAA
JMSF034B01+           TGTTCTTCTTGTGAGCAACAGTCCCGGCAACTACTCCGATGATCAAACCGACGAGAAGAA
JMSF011H11+           TGTTCTTCTTGTGAGCAACAGTCCCGGCAACTACTCCGATGATCAAACCGACGAGAAGAA
                      ____________________________________________________________
consensus             TGTTCTTCTTGTGAGCAACAGTCCCGGCAACTACTCCGATGATCAAACCGACGAGAAGAA
 
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JMSF001L18+           CGGCGGAAACGACGACGATGATTATACGCCTGCGGGTCTTCCTCCGGTAAGCTTGTTCCT
JMSF034B01+           CGGCGGAAACGACGACGATGATTATACGCCTGCGGGTCTTCCTCCGGTAAGCTTGTTCCT
JMSF011H11+           CGGCGGAAACGACGACGATGATTATACGCCTGCGGGTCTTCCTCCGGTAAGCTTGTTCCT
                      ____________________________________________________________
consensus             CGGCGGAAACGACGACGATGATTATACGCCTGCGGGTCTTCCTCCGGTAAGCTTGTTCCT
 
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JMSF001L18+           CCGCAGGGTCCACTTTCCCATAGCCTTTGAAGGAGTTGATTGTATCCATAACTGGAACTG
JMSF034B01+           CCGCAGGGTCCACTTTCCCATAGCCTTTGAAGGAGTTGATTGTATCCATAACTGGAACTG
JMSF011H11+           CCGCAGGGTCCACTTTCCCATAGCCTTTGAAGGAGTTGATTGTATCCATAACTGGAACTG
                      ____________________________________________________________
consensus             CCGCAGGGTCCACTTTCCCATAGCCTTTGAAGGAGTTGATTGTATCCATAACTGGAACTG
 
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JMSF001L18+           A                                                           
JMSF034B01+           A                                                           
JMSF011H11+           ATATGAACCTTGAAGCAATTACAATGGCGGAAAGAAATTGGTTCACGTGTTTTATAGATC
                      ____________________________________________________________
consensus             ATATGAACCTTGAAGCAATTACAATGGCGGAAAGAAATTGGTTCACGTGTTTTATAGATC