Contig 005004:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011G04Sequence366005004 (3)ref|XP_009799495.1|8e-30PREDICTED: uncharacterized protein LOC104245573 isoform X1 [Nicotiana sylvestri759010371 (3)ref|XP_009611123.1|2e-109PREDICTED: uncharacterized protein LOC104104686 isoform X3 [Nicotiana tomentosi
JMSF030H19Sequence653005004 (3)ref|XP_009611121.1|3e-119PREDICTED: uncharacterized protein LOC104104686 isoform X1 [Nicotiana tomentosi624010371 (3)ref|XP_009611123.1|2e-90PREDICTED: uncharacterized protein LOC104104686 isoform X3 [Nicotiana tomentosi
JMSF034F08Sequence646005004 (3)ref|XP_009611121.1|5e-118PREDICTED: uncharacterized protein LOC104104686 isoform X1 [Nicotiana tomentosi

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+                            CATGAGAACGTACAATAAAAGCTGCTTGATTTTAGTTAACCTG
JMSF030H19+                          CCCATGAGAACGTACAATAAAAGCTGCTTGATTTTAGTTAACCTG
                      ____________________________________________________________
consensus                            CCCATGAGAACGTACAATAAAAGCTGCTTGATTTTAGTTAACCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           TCGGGATCTTCAATTGCCAATCCGGTTTCTTCATCAGTAATGTAAACAACCGAGGCCATT
JMSF030H19+           TCGGGATCTTCAATTGCCAATCCGGTTTCTTCATCAGTAATGTAAACAACCGAGGCCATT
                      ____________________________________________________________
consensus             TCGGGATCTTCAATTGCCAATCCGGTTTCTTCATCAGTAATGTAAACAACCGAGGCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           CTTGAATTGTGAGTCCATACTTCTGCAGCTACAACGTAGCATTTGTGGTCGGTGAGAACC
JMSF030H19+           CTTGAATTGTGAGTCCATACTTCTGCAGCTACAACGTTGCATTTGTGGTCGGTGAGAACC
                      ____________________________________________________________
consensus             CTTGAATTGTGAGTCCATACTTCTGCAGCTACAACGTTGCATTTGTGGTCGGTGAGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           GCAAAGATCTCCGAAAGCAGGCCTTGCCGGTCTCTTCCCGACAATTCAATCGTGGTGTGC
JMSF030H19+           GCAAAGATCTCCGAAAGCAGGCCTTGCCGGTCTCTTCCCGACAATTCAATCGTGGTGTGC
                      ____________________________________________________________
consensus             GCAAAGATCTCCGAAAGCAGGCCTTGCCGGTCTCTTCCCGACAATTCAATCGTGGTGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           TTAACCGCGGGTTGAACACCGACCGATCTTGTCAATGACCGAAAGCTATAACTCCTTGGT
JMSF030H19+           TTAACCGCGGGTTGAACACCGACCGATCTTGTCAATGACCGAAAGCTATAACTCCTTGGT
                      ____________________________________________________________
consensus             TTAACCGCGGGTTGAACACCGACCGATCTTGTCAATGACCGAAAGCTATAACTCCTTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           CCCAGCGACTGCTGAATGCGCTCTGCAACGTTATCTTCGGTCAGCTTTTTCCCATACTGA
JMSF030H19+           CCCAGCGACTGCTGAATGCGCTCTGCAACGTTATCTTCGGTCAGCTTTTTCCCATACTGA
                      ____________________________________________________________
consensus             CCCAGCGACTGCTGAATGCGCTCTGCAACGTTATCTTCGGTCAGCTTTTTCCCATACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           TCAGTAACATGAAACACATCCATAAACCATTCTCCATCCGAAGAAATGTAAGCCCGACGA
JMSF030H19+           TCAGTAACATGAAACACATCCATAAACCATTCTCCATCCGAAGAAATGTAAGCCCGACGA
JMSF011G04+                                                                 CGACGA
                      ____________________________________________________________
consensus             TCAGTAACATGAAACACATCCATAAACCATTCTCCATCCGAAGAAATGTAAGCCCGACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           ACTATGAGGTTCAAATCAGTAAGAACCTGAGCCACCTCCAACAAGCTGCCGCGCTTATTA
JMSF030H19+           ACTATGAGGTTCAAATCAGTAAGAACCTGAGCCACCTCCAACAAGCTGCCGCGCTTATTA
JMSF011G04+           ACTATGAGGTTCAAATCAGTAAGAACCTGAGCCACNTCCAACAAGCTGCCGCGCTTATTA
                      ____________________________________________________________
consensus             ACTATGAGGTTCAAATCAGTAAGAACCTGAGCCACCTCCAACAAGCTGCCGCGCTTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           GCACTATCAACCTTGATCAATGTTGTTTTCTTGTCTGATATGTTATCAACAGTGACCCTT
JMSF030H19+           GCACTATCAACCTTGATCAATGTTGTTTTCTTGTCTGATATGTTATCAACAGTGACCCTT
JMSF011G04+           GCACTATCAACCTTGATCAATGTTGTTTTCTTGTCTGATATGTTATCAACAGTGACCCTT
                      ____________________________________________________________
consensus             GCACTATCAACCTTGATCAATGTTGTTTTCTTGTCTGATATGTTATCAACAGTGACCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           GGCGGGTTCATCCGGAGCACAAGCTTCTCAAATTCATCATCAACAGTGACAGAAGAGGAC
JMSF030H19+           GGCGGGTTCATCCGGAGCACAAGCTTCTCAAATTCATCATCAACAGTGACAGAAGAGGAC
JMSF011G04+           GGCGGGTTCATCCGGAGCACAAGCTTCTCAAATTCATCATCAACAGTGACAGAAGAGGAC
                      ____________________________________________________________
consensus             GGCGGGTTCATCCGGAGCACAAGCTTCTCAAATTCATCATCAACAGTGACAGAAGAGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           CAACAATCCATGGCTGCGCTGATGAAATCTCTGCTCCCTTTCCCCTCTAAAGAGTGTTGC
JMSF030H19+           CAACAATCCATGGCTGCGCTGATGAAATCTCTGCTCCCTTTCCCCTCTAAAGAGTGTTGC
JMSF011G04+           CAACAATCCATGGCTGCGCTGATGAAATCTCTGCTCCCTTTCCCCTCTAAAGAGTGTTGC
                      ____________________________________________________________
consensus             CAACAATCCATGGCTGCGCTGATGAAATCTCTGCTCCCTTTCCCCTCTAAAGAGTGTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034F08+           TT                                                          
JMSF030H19+           TT                                                          
JMSF011G04+           TTAAGGTGTGTATGGTAAGGAAAGGGGTCCGTTTTGTTGGGTGTGTGTTGGTTAAAGCGC
                      ____________________________________________________________
consensus             TTAAGGTGTGTATGGTAAGGAAAGGGGTCCGTTTTGTTGGGTGTGTGTTGGTTAAAGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011G04+           GGAGAGGGAGGGAGGGAGGGAGAGAGGGGGTGAAAGAAAGGGTGTGTGTGGGGGACAGCC
                      ____________________________________________________________
consensus             GGAGAGGGAGGGAGGGAGGGAGAGAGGGGGTGAAAGAAAGGGTGTGTGTGGGGGACAGCC