| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002B21 | Sequence | 566 | 005002 (6) | emb|CDP06456.1| | 1e-61 | unnamed protein product [Coffea canephora] | 684 | 005002 (6) | ref|XP_008388854.1| | 2e-93 | PREDICTED: LOW QUALITY PROTEIN: pyruvate decarboxylase 1 [Malus domestica] |
| JMFF015D17 | Sequence | 567 | 005002 (6) | emb|CDP06456.1| | 2e-73 | unnamed protein product [Coffea canephora] | 513 | 012274 (5) | gb|KJB36954.1| | 3e-78 | hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth |
| JMFF015D22 | Sequence | 561 | 005002 (6) | emb|CDP06456.1| | 2e-73 | unnamed protein product [Coffea canephora] | 704 | 012274 (5) | gb|KJB36954.1| | 2e-125 | hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth |
| JMFF016A21 | Sequence | 571 | 005002 (6) | emb|CDP06456.1| | 2e-67 | unnamed protein product [Coffea canephora] | 701 | 012274 (5) | gb|KJB36954.1| | 9e-105 | hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth |
| JMSF011E09 | Sequence | 468 | 005002 (6) | emb|CDP06456.1| | 2e-47 | unnamed protein product [Coffea canephora] | 791 | 012274 (5) | gb|KJB36954.1| | 9e-141 | hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth |
This contig is upended
. : . : . : . : . : . :
rJMFF002B21- ATGGTAATNANATTCCGATATACAGA
____________________________________________________________
consensus ATGGTAATNANATTCCGATATACAGA
. : . : . : . : . : . :
rJMFF002B21- TGAGCAATAGTTCNATGATTACACTCTCGTAANTAAGAGTAGGAAACTTGAAAGTTGTTC
____________________________________________________________
consensus TGAGCAATAGTTCNATGATTACACTCTCGTAANTAAGAGTAGGAAACTTGAAAGTTGTTC
. : . : . : . : . : . :
rJMFF002B21- AAGGTAGACAAGCCAATCCCCCTTTGTTATTTCCTCCCTCAACNACACTTCACAGTTTAC
____________________________________________________________
consensus AAGGTAGACAAGCCAATCCCCCTTTGTTATTTCCTCCCTCAACNACACTTCACAGTTTAC
. : . : . : . : . : . :
rJMFF002B21- TGAGGGTTTGGGGTTAAGTGAAAATGGAACCGGTTCACGAATAAAGGTGGGATGAGGGAT
____________________________________________________________
consensus TGAGGGTTTGGGGTTAAGTGAAAATGGAACCGGTTCACGAATAAAGGTGGGATGAGGGAT
. : . : . : . : . : . :
rJMFF002B21- CCCTGCCAAGTTACAGCCGATGCTTATGTAAACCGGCTTGCTCTCCTTCAACGCCGTCGA
____________________________________________________________
consensus CCCTGCCAAGTTACAGCCGATGCTTATGTAAACCGGCTTGCTCTCCTTCAACGCCGTCGA
. : . : . : . : . : . :
rJMFF002B21- TATCGCCGTATCGATCAACTCGTGAGCATCTTCCNAATTGTTCACCACAGCCTGATAGCA
____________________________________________________________
consensus TATCGCCGTATCGATCAACTCGTGAGCATCTTCCNAATTGTTCACCACAGCCTGATAGCA
. : . : . : . : . : . :
rJMFF002B21- AGTAACCGTTTGAAAGCACCGGAGCTCCTGGGTAAAATCGGGTAAACCGATAGTGTGGNG
JMFF015D17+ GGTAAAATCGGGTAAACCGATAGTGTGGTG
JMFF015D22+ GGGTAAAATCGGGTAAACCGATAGTGTGGTG
JMFF002B21+ GGGTAAAATCGGGTAAACCGATAGTGTGGTG
JMFF016A21+ GGGTAAAATCGGGTAAACCGATAGTGTGGTG
____________________________________________________________
consensus AGTAACCGTTTGAAAGCACCGGAGCTCCTGGGTAAAATCGGGTAAACCGATAGTGTGGTG
. : . : . : . : . : . :
rJMFF002B21- GAGGATCCGGTTAGTT-CCGTANTCGTTCGAGTTGGGACCACCGACGATGCATATGANCG
JMFF015D17+ GAGGATCCGGTTAGTT-CCGTAGTCGTTCGAGTTGGGACCACCGACGATGCATATGAGCG
JMFF015D22+ GAGGATCCGGTTAGTT-CCGTAGTCGTTCGAGTTGGGACCACCGACGATGCATATGAGCG
JMFF002B21+ GAGGATCCGGTTAGTTCCCGTAGTCGTTCGAGTTGGGACCACCGACGATGCATATGAGCG
JMFF016A21+ GAGGATCCGGTTAGTT-CCGTAGTCGTTCGAGTTGGGACCACCGACGATGCATATGAGCG
____________________________________________________________
consensus GAGGATCCGGTTAGTT-CCGTAGTCGTTCGAGTTGGGACCACCGACGATGCATATGAGCG
. : . : . : . : . : . :
rJMFF002B21- GGAGGTTTTCACTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCCTCCGACAGTGA
JMFF015D17+ GGAGGTTTTCACTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCCTCCGACAGTGA
JMFF015D22+ GGAGGTTTTCACTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCCTCCGACAGTGA
JMFF002B21+ GGAGGTTTTCACTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCCTCCGACAGTGA
JMFF016A21+ GGAGGTTTTCACTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCCTCCGACAGTGA
JMSF011E09+ CTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCNTCCGACAGTGA
____________________________________________________________
consensus GGAGGTTTTCACTGTACGCGCCGGCGATAGCGTTGAGGACGCTAAGTCCTCCGACAGTGA
. : . : . : . : . : . :
rJMFF002B21- AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
JMFF015D17+ AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
JMFF015D22+ AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
JMFF002B21+ AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
JMFF016A21+ AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
JMSF011E09+ AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
____________________________________________________________
consensus AAGTGACGACGCAGGCTCCAACACCGCGGGCCCGAGCATAGCCGTCGGCGGCGTATCCGG
. : . : . : . : . : . :
rJMFF002B21- CGTTGAGCTCGTTGCANCANCCGATGANTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
JMFF015D17+ CGTTGAGCTCGTTGCAGCAGCCGATGAGTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
JMFF015D22+ CGTTGAGCTCGTTGCAGCAGCCGATGAGTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
JMFF002B21+ CGTTGAGCTCGTTGCAGCAGCCGATGAGTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
JMFF016A21+ CGTTGAGCTCGTTGCAGCAGCCGATGAGTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
JMSF011E09+ CGTTGAGCTCGTTGCAGCAGCCGATGAGTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
____________________________________________________________
consensus CGTTGAGCTCGTTGCAGCAGCCGATGAGTCTGAGCCCCGGCTCCGCAATGAGGTGGTCAA
. : . : . : . : . : . :
rJMFF002B21- GCAGAGTAAAGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCANCCCGATCTGGACG
JMFF015D17+ GCAGAGTAAGGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCACCCCGATCTGGACGA
JMFF015D22+ GCAGAGTAAGGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCACCCCGATCTGGACGA
JMFF002B21+ GCAGAGTAAGGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCACCCCGATCTGGACGA
JMFF016A21+ GCAGAGTAAGGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCACCCCGATCTGGACGA
JMSF011E09+ GCAGAGTAAGGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCACCCCGATCTGGACGA
____________________________________________________________
consensus GCAGAGTAAGGTTGAAGTCCCCGGGGACGCTGAACACGTCGGTCACCCCGATCTGGACGA
. : . : . : . : . : . :
JMFF015D17+ GGCGGCGCGCGAGATGGCGGCCTAGAGTTGCCTCAGCCGAGCTGAAGGCAACGGGGGTTG
JMFF015D22+ GGCGGCGCGCGAGATGGCGGCCTAGAGTTGCCTCAGCCGAGCTGAAGGCAACGGGGGTTG
JMFF002B21+ GGCGGCGCGCGAGATGGCGGCCTAGAGTTGCCTCAGCCGAGCTGAAGGCAACGGGGGTTG
JMFF016A21+ GGCGGCGCGCGAGATGGCGGCCTAGAGTTGCCTCAGCCGAGCTGAAGGCAACGGGGGTTG
JMSF011E09+ GGCGGCGCGCGAGATGGCGGCCTAGAGTTGCCTCAGCCGAGCTGAAGGCAACGGGGGTTG
____________________________________________________________
consensus GGCGGCGCGCGAGATGGCGGCCTAGAGTTGCCTCAGCCGAGCTGAAGGCAACGGGGGTTG
. : . : . : . : . : . :
JMFF015D17+ AGTGAACCGTATTGACGCCGATTGTCGGCGCGTTGGCGACGTCGCCGCT-CCCTGGCTTA
JMFF015D22+ AGTGAACCGTATTGACGCCGATTGTCGGCGCGTTGGCGACGTCGCCGCT-CCCTGGCTTA
JMFF002B21+ AGTGAACCGTATTGACGCCGATTGTCGGCGCGTTGGCGACGTCGCCGCT-CCCTGGCTTA
JMFF016A21+ AGTGAACCGTATTGACGCCGATTGTCGGCGCGTTGGCGACGTCGCCGCTNCCCTGGCTTA
JMSF011E09+ AGTGAACCGTATTGACGCCGATTGTCGGCGCGTTGGCGACGTCGCCGCT-CCCTGGCTTA
____________________________________________________________
consensus AGTGAACCGTATTGACGCCGATTGTCGGCGCGTTGGCGACGTCGCCGCT-CCCTGGCTTA
. : . : . : . : . : . :
JMFF015D17+ CAAGCTTCGATTGATCCGATCTTAGTATCCATAACAGCAACAAAAGAACAGTTGAGAAAT
JMFF015D22+ CAAGCTTCGATTGATCCGATCTTAGTATCCATAACAGCAACAAAAGAACAGTTGAGAAAT
JMFF002B21+ CAAGCTTCGATTGATCCGATCTTAGTATCCATAACAGCAACAAAAGAACAGTTGAGAAAT
JMFF016A21+ CAAGCTTCGATTGATCCGATCTTAGTATCCATAACAGCAACAAAAGAACAGTTGAGAAAT
JMSF011E09+ CAAGCTTCGATTGATCCGATCTTAGTATCCATAACAGCAACAAAAGAACAGTTGAGAAAT
____________________________________________________________
consensus CAAGCTTCGATTGATCCGATCTTAGTATCCATAACAGCAACAAAAGAACAGTTGAGAAAT
. : . : . : . : . : . :
JMFF015D17+ GGTGTAGTATCTTCCTGCTTCTTCTACAACTTTCAGTGGAAATTCGTATAGTGTG
JMFF015D22+ GGTGTAGTATCTTCCTGCTTCTTCTACAACTTTCAGTGGAAATTCGTA
JMFF002B21+ GGTGTAGTATCTTCCTGCTTCTTCTACAACTTTCAGTGGAAATTCGTATAGTGTG
JMFF016A21+ GGTGTAGTATCTTCCTGCTTCTTCTACAACTTTCAGTGGAAATTCGTATAGTGTG
JMSF011E09+ GGTGTAGTATCTTCCTGCTTCTTCTACAACTTTCAGTGGAAATTCGTATAGTGTGTGACC
____________________________________________________________
consensus GGTGTAGTATCTTCCTGCTTCTTCTACAACTTTCAGTGGAAATTCGTATAGTGTGTGACC